miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21853 3' -52.1 NC_004902.1 + 6111 0.66 0.830583
Target:  5'- -cUGCUGGgucugauccCGCAGGC-UACCACCUa -3'
miRNA:   3'- gaACGGUUau-------GUGUCCGuGUGGUGGG- -5'
21853 3' -52.1 NC_004902.1 + 38960 0.66 0.830583
Target:  5'- -gUGCCGAUGauCAGGCccAgACCAUCUg -3'
miRNA:   3'- gaACGGUUAUguGUCCG--UgUGGUGGG- -5'
21853 3' -52.1 NC_004902.1 + 6355 0.66 0.827752
Target:  5'- aUUGCCAaucagGUACugGuuguucgcauccuuGGCGagcucaauCGCCGCCCa -3'
miRNA:   3'- gAACGGU-----UAUGugU--------------CCGU--------GUGGUGGG- -5'
21853 3' -52.1 NC_004902.1 + 4714 0.66 0.821069
Target:  5'- -cUGCCcucuGGUGCAgCAGGCAUGCU-CCUa -3'
miRNA:   3'- gaACGG----UUAUGU-GUCCGUGUGGuGGG- -5'
21853 3' -52.1 NC_004902.1 + 35476 0.66 0.821069
Target:  5'- gCUUGCCAAUAgGCcaGCGUGCCAUCUu -3'
miRNA:   3'- -GAACGGUUAUgUGucCGUGUGGUGGG- -5'
21853 3' -52.1 NC_004902.1 + 39561 0.66 0.818172
Target:  5'- -gUGCgGGUGCAU-GGCAaggacuaccgagccCACCGCCUu -3'
miRNA:   3'- gaACGgUUAUGUGuCCGU--------------GUGGUGGG- -5'
21853 3' -52.1 NC_004902.1 + 36506 0.66 0.811338
Target:  5'- -cUGCCGGccCAUGGGCauACGCCgcagaACCCg -3'
miRNA:   3'- gaACGGUUauGUGUCCG--UGUGG-----UGGG- -5'
21853 3' -52.1 NC_004902.1 + 12083 0.66 0.811338
Target:  5'- cCUUGCU---GCACccAGGCcaccaucagauACACUGCCCg -3'
miRNA:   3'- -GAACGGuuaUGUG--UCCG-----------UGUGGUGGG- -5'
21853 3' -52.1 NC_004902.1 + 35635 0.66 0.811338
Target:  5'- -gUGCUggUGCACucuGGCAgcUCugCCg -3'
miRNA:   3'- gaACGGuuAUGUGu--CCGUguGGugGG- -5'
21853 3' -52.1 NC_004902.1 + 19179 0.66 0.801401
Target:  5'- --gGCUggAAUACaguGCAGGCACACUGCg- -3'
miRNA:   3'- gaaCGG--UUAUG---UGUCCGUGUGGUGgg -5'
21853 3' -52.1 NC_004902.1 + 43918 0.66 0.801401
Target:  5'- --gGUgGAUACuauagGCAGcGCGCACCGCUg -3'
miRNA:   3'- gaaCGgUUAUG-----UGUC-CGUGUGGUGGg -5'
21853 3' -52.1 NC_004902.1 + 35222 0.66 0.791272
Target:  5'- gUUGCguGgAUACGGGCugACUugCUa -3'
miRNA:   3'- gAACGguUaUGUGUCCGugUGGugGG- -5'
21853 3' -52.1 NC_004902.1 + 18901 0.66 0.780961
Target:  5'- -cUGUCAacacaAUugACGGGCGgACCACagCCa -3'
miRNA:   3'- gaACGGU-----UAugUGUCCGUgUGGUG--GG- -5'
21853 3' -52.1 NC_004902.1 + 3150 0.66 0.780961
Target:  5'- -cUGCCAGggcacgcuCACAGGuuUugAUCGCCCc -3'
miRNA:   3'- gaACGGUUau------GUGUCC--GugUGGUGGG- -5'
21853 3' -52.1 NC_004902.1 + 36722 0.66 0.780961
Target:  5'- --cGCCA--GCAUcaaacgGGGUggACACCACCUg -3'
miRNA:   3'- gaaCGGUuaUGUG------UCCG--UGUGGUGGG- -5'
21853 3' -52.1 NC_004902.1 + 38195 0.67 0.759847
Target:  5'- cCUUGCCAc-GCAUAGuGUACAgCACUa -3'
miRNA:   3'- -GAACGGUuaUGUGUC-CGUGUgGUGGg -5'
21853 3' -52.1 NC_004902.1 + 43538 0.67 0.759847
Target:  5'- -gUGCCAGccUACAcCAGGgACACCAg-- -3'
miRNA:   3'- gaACGGUU--AUGU-GUCCgUGUGGUggg -5'
21853 3' -52.1 NC_004902.1 + 32615 0.67 0.74907
Target:  5'- -gUGCagCAAUacgcaGCACAGGCACggAUCACCa -3'
miRNA:   3'- gaACG--GUUA-----UGUGUCCGUG--UGGUGGg -5'
21853 3' -52.1 NC_004902.1 + 36596 0.67 0.74907
Target:  5'- --cGCCAGUAgcUACuGcCACGCCGCCUu -3'
miRNA:   3'- gaaCGGUUAU--GUGuCcGUGUGGUGGG- -5'
21853 3' -52.1 NC_004902.1 + 16148 0.67 0.74581
Target:  5'- -gUGCCcAUACcaacaacggcaguaACAGGCugauuuGCACCuGCCCa -3'
miRNA:   3'- gaACGGuUAUG--------------UGUCCG------UGUGG-UGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.