Results 41 - 60 of 72 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22245 | 3' | -62.3 | NC_005045.1 | + | 17803 | 0.68 | 0.200794 |
Target: 5'- uGAGGCGUucaaUGCaaugGCCGcCGCCGAGGUg -3' miRNA: 3'- -CUCCGCG----ACGg---UGGUcGUGGCUCCGg -5' |
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22245 | 3' | -62.3 | NC_005045.1 | + | 16633 | 0.7 | 0.149769 |
Target: 5'- aGGGcGCGCUG-CACUGGCuggGCCGcaAGGCCg -3' miRNA: 3'- -CUC-CGCGACgGUGGUCG---UGGC--UCCGG- -5' |
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22245 | 3' | -62.3 | NC_005045.1 | + | 16438 | 0.74 | 0.068797 |
Target: 5'- -uGGCgGCUGCCuGCCGGCGCUu-GGCCa -3' miRNA: 3'- cuCCG-CGACGG-UGGUCGUGGcuCCGG- -5' |
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22245 | 3' | -62.3 | NC_005045.1 | + | 15971 | 0.69 | 0.180687 |
Target: 5'- cGAGGCGCUGCU-CCAGaaGCgGAGGg- -3' miRNA: 3'- -CUCCGCGACGGuGGUCg-UGgCUCCgg -5' |
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22245 | 3' | -62.3 | NC_005045.1 | + | 15922 | 0.67 | 0.253207 |
Target: 5'- -cGGCGCauCCA-CAGCACCucGGCCu -3' miRNA: 3'- cuCCGCGacGGUgGUCGUGGcuCCGG- -5' |
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22245 | 3' | -62.3 | NC_005045.1 | + | 15861 | 0.67 | 0.228639 |
Target: 5'- cGAGGUGCUGUgGau-GCGCCGAacGCCg -3' miRNA: 3'- -CUCCGCGACGgUgguCGUGGCUc-CGG- -5' |
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22245 | 3' | -62.3 | NC_005045.1 | + | 15071 | 0.68 | 0.217128 |
Target: 5'- -cGGCaGCgggaGCCGCC---ACCGGGGCCa -3' miRNA: 3'- cuCCG-CGa---CGGUGGucgUGGCUCCGG- -5' |
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22245 | 3' | -62.3 | NC_005045.1 | + | 14952 | 0.69 | 0.171317 |
Target: 5'- uGAGGCaCUGCCugcgggacaGCCGGUACagcaGGGGCg -3' miRNA: 3'- -CUCCGcGACGG---------UGGUCGUGg---CUCCGg -5' |
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22245 | 3' | -62.3 | NC_005045.1 | + | 13746 | 0.66 | 0.273027 |
Target: 5'- cGGGuCGCa-CCACCGGCAUUGcucuacAGGCCa -3' miRNA: 3'- cUCC-GCGacGGUGGUCGUGGC------UCCGG- -5' |
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22245 | 3' | -62.3 | NC_005045.1 | + | 13624 | 0.66 | 0.28692 |
Target: 5'- cAGGCGCUcGCUcauguaGCgGGCAgCGucGGCCa -3' miRNA: 3'- cUCCGCGA-CGG------UGgUCGUgGCu-CCGG- -5' |
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22245 | 3' | -62.3 | NC_005045.1 | + | 13149 | 0.7 | 0.151398 |
Target: 5'- --aGUGCagagGCCACCAGCcucgucauguacaagGCCGAGGaCCa -3' miRNA: 3'- cucCGCGa---CGGUGGUCG---------------UGGCUCC-GG- -5' |
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22245 | 3' | -62.3 | NC_005045.1 | + | 12497 | 0.68 | 0.217128 |
Target: 5'- aGGGCGUcGCCGCUGGUGCUGAacacgGGCg -3' miRNA: 3'- cUCCGCGaCGGUGGUCGUGGCU-----CCGg -5' |
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22245 | 3' | -62.3 | NC_005045.1 | + | 11804 | 0.68 | 0.22282 |
Target: 5'- uGGGCug-GCUACCuggagcGCugCGAGGCCc -3' miRNA: 3'- cUCCGcgaCGGUGGu-----CGugGCUCCGG- -5' |
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22245 | 3' | -62.3 | NC_005045.1 | + | 11684 | 0.67 | 0.253207 |
Target: 5'- uGGGUGCcGCCguacuucggaGCCAGCucgUCGAGuGCCg -3' miRNA: 3'- cUCCGCGaCGG----------UGGUCGu--GGCUC-CGG- -5' |
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22245 | 3' | -62.3 | NC_005045.1 | + | 11248 | 0.67 | 0.240662 |
Target: 5'- -uGGCGCagcaUGCCAuCCAGUACCc-GGCg -3' miRNA: 3'- cuCCGCG----ACGGU-GGUCGUGGcuCCGg -5' |
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22245 | 3' | -62.3 | NC_005045.1 | + | 10492 | 0.68 | 0.195592 |
Target: 5'- cGGGGUGUcGCCccGCCGGCAaucuuccaUGAGGCUg -3' miRNA: 3'- -CUCCGCGaCGG--UGGUCGUg-------GCUCCGG- -5' |
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22245 | 3' | -62.3 | NC_005045.1 | + | 9884 | 0.69 | 0.190508 |
Target: 5'- cAGGCGCggGCCGCCu---UCGGGGUCg -3' miRNA: 3'- cUCCGCGa-CGGUGGucguGGCUCCGG- -5' |
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22245 | 3' | -62.3 | NC_005045.1 | + | 8698 | 1.09 | 0.000121 |
Target: 5'- gGAGGCGCUGCCACCAGCACCGAGGCCc -3' miRNA: 3'- -CUCCGCGACGGUGGUCGUGGCUCCGG- -5' |
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22245 | 3' | -62.3 | NC_005045.1 | + | 8594 | 0.73 | 0.090425 |
Target: 5'- -uGGUGCUGCCggcguacaugaaggGCCuccaCGCCGGGGCCu -3' miRNA: 3'- cuCCGCGACGG--------------UGGuc--GUGGCUCCGG- -5' |
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22245 | 3' | -62.3 | NC_005045.1 | + | 8254 | 0.7 | 0.141861 |
Target: 5'- cAGGCGCUGCgcgaACUgaucaAGCugCGAGGUg -3' miRNA: 3'- cUCCGCGACGg---UGG-----UCGugGCUCCGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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