Results 1 - 20 of 62 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
22269 | 3' | -57.5 | NC_005045.1 | + | 37377 | 0.66 | 0.568624 |
Target: 5'- aCCGcCUACuugaGCGCCGCCgCCGggACCGg -3' miRNA: 3'- -GGCuGGUGua--UGUGGCGG-GGC--UGGUg -5' |
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22269 | 3' | -57.5 | NC_005045.1 | + | 29495 | 0.66 | 0.547176 |
Target: 5'- gUGGCCugAgccUGCACaGCCuuGGCCAg -3' miRNA: 3'- gGCUGGugU---AUGUGgCGGggCUGGUg -5' |
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22269 | 3' | -57.5 | NC_005045.1 | + | 31961 | 0.66 | 0.547176 |
Target: 5'- gUCGGCUGgAUACcuGCCGCCUgGAgCGCc -3' miRNA: 3'- -GGCUGGUgUAUG--UGGCGGGgCUgGUG- -5' |
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22269 | 3' | -57.5 | NC_005045.1 | + | 23391 | 0.66 | 0.547176 |
Target: 5'- cCCGuuguuCCGCAaGCACCcgcucagccgGCCCCGGuagcuCCGCc -3' miRNA: 3'- -GGCu----GGUGUaUGUGG----------CGGGGCU-----GGUG- -5' |
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22269 | 3' | -57.5 | NC_005045.1 | + | 33963 | 0.66 | 0.547176 |
Target: 5'- -gGGCUACcgGCAuCCGCUCCGAguUCAUg -3' miRNA: 3'- ggCUGGUGuaUGU-GGCGGGGCU--GGUG- -5' |
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22269 | 3' | -57.5 | NC_005045.1 | + | 28807 | 0.66 | 0.545045 |
Target: 5'- aCCGGCCACcagcggggacCGuuGCCCCG-CCGu -3' miRNA: 3'- -GGCUGGUGuau-------GUggCGGGGCuGGUg -5' |
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22269 | 3' | -57.5 | NC_005045.1 | + | 19244 | 0.66 | 0.536547 |
Target: 5'- aCGugCAUcgggaaGUACACUGCCuuG-CCAUg -3' miRNA: 3'- gGCugGUG------UAUGUGGCGGggCuGGUG- -5' |
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22269 | 3' | -57.5 | NC_005045.1 | + | 21507 | 0.66 | 0.536547 |
Target: 5'- gCCGauGCCACugGCACCgGCaCUCGACgACg -3' miRNA: 3'- -GGC--UGGUGuaUGUGG-CG-GGGCUGgUG- -5' |
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22269 | 3' | -57.5 | NC_005045.1 | + | 12112 | 0.66 | 0.525991 |
Target: 5'- uCCGGCCAUcuucguacgGCACCcgGCCCUuguACCGCa -3' miRNA: 3'- -GGCUGGUGua-------UGUGG--CGGGGc--UGGUG- -5' |
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22269 | 3' | -57.5 | NC_005045.1 | + | 14066 | 0.66 | 0.525991 |
Target: 5'- cCUGGCCAacaAgGCUGCCgaGACCGCa -3' miRNA: 3'- -GGCUGGUguaUgUGGCGGggCUGGUG- -5' |
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22269 | 3' | -57.5 | NC_005045.1 | + | 26329 | 0.66 | 0.52494 |
Target: 5'- aCG-CCACGgGCACCaccuacaGCCacaCGGCCACu -3' miRNA: 3'- gGCuGGUGUaUGUGG-------CGGg--GCUGGUG- -5' |
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22269 | 3' | -57.5 | NC_005045.1 | + | 38077 | 0.66 | 0.515514 |
Target: 5'- -aGACCAgaaccugcgccCAgGCGCUGCCCUcuGGCCGCc -3' miRNA: 3'- ggCUGGU-----------GUaUGUGGCGGGG--CUGGUG- -5' |
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22269 | 3' | -57.5 | NC_005045.1 | + | 8449 | 0.66 | 0.515514 |
Target: 5'- aUCGACCugGCGUAUgaGCUGCgCCGGCUgaGCg -3' miRNA: 3'- -GGCUGG--UGUAUG--UGGCGgGGCUGG--UG- -5' |
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22269 | 3' | -57.5 | NC_005045.1 | + | 40081 | 0.66 | 0.515514 |
Target: 5'- aCCGACCGaggcuCACUGCCgaaggaCGACCGg -3' miRNA: 3'- -GGCUGGUguau-GUGGCGGg-----GCUGGUg -5' |
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22269 | 3' | -57.5 | NC_005045.1 | + | 39265 | 0.66 | 0.514471 |
Target: 5'- -aGGCCACAacccgcGCACCggcaaggGCCUCGACgGCa -3' miRNA: 3'- ggCUGGUGUa-----UGUGG-------CGGGGCUGgUG- -5' |
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22269 | 3' | -57.5 | NC_005045.1 | + | 20212 | 0.67 | 0.505122 |
Target: 5'- gCC-ACCugGgACugACCGCCCUGGCCuGCg -3' miRNA: 3'- -GGcUGGugUaUG--UGGCGGGGCUGG-UG- -5' |
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22269 | 3' | -57.5 | NC_005045.1 | + | 41594 | 0.67 | 0.505122 |
Target: 5'- uCCGGugGgGUaGCGCCGCCCUcGCCGCc -3' miRNA: 3'- -GGCUggUgUA-UGUGGCGGGGcUGGUG- -5' |
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22269 | 3' | -57.5 | NC_005045.1 | + | 31045 | 0.67 | 0.494822 |
Target: 5'- gCUGACCuugACGUugGCACCguacucggcGCCCCGcAUCGCa -3' miRNA: 3'- -GGCUGG---UGUA--UGUGG---------CGGGGC-UGGUG- -5' |
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22269 | 3' | -57.5 | NC_005045.1 | + | 14144 | 0.67 | 0.494822 |
Target: 5'- cCCGGCgG---GCACCGCCaUgGGCCGCu -3' miRNA: 3'- -GGCUGgUguaUGUGGCGG-GgCUGGUG- -5' |
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22269 | 3' | -57.5 | NC_005045.1 | + | 10119 | 0.67 | 0.488688 |
Target: 5'- aCGAUCACGUACccguucuucuugaugAUgGCCUCGACgGCc -3' miRNA: 3'- gGCUGGUGUAUG---------------UGgCGGGGCUGgUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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