miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22269 3' -57.5 NC_005045.1 + 37377 0.66 0.568624
Target:  5'- aCCGcCUACuugaGCGCCGCCgCCGggACCGg -3'
miRNA:   3'- -GGCuGGUGua--UGUGGCGG-GGC--UGGUg -5'
22269 3' -57.5 NC_005045.1 + 23391 0.66 0.547176
Target:  5'- cCCGuuguuCCGCAaGCACCcgcucagccgGCCCCGGuagcuCCGCc -3'
miRNA:   3'- -GGCu----GGUGUaUGUGG----------CGGGGCU-----GGUG- -5'
22269 3' -57.5 NC_005045.1 + 33963 0.66 0.547176
Target:  5'- -gGGCUACcgGCAuCCGCUCCGAguUCAUg -3'
miRNA:   3'- ggCUGGUGuaUGU-GGCGGGGCU--GGUG- -5'
22269 3' -57.5 NC_005045.1 + 31961 0.66 0.547176
Target:  5'- gUCGGCUGgAUACcuGCCGCCUgGAgCGCc -3'
miRNA:   3'- -GGCUGGUgUAUG--UGGCGGGgCUgGUG- -5'
22269 3' -57.5 NC_005045.1 + 29495 0.66 0.547176
Target:  5'- gUGGCCugAgccUGCACaGCCuuGGCCAg -3'
miRNA:   3'- gGCUGGugU---AUGUGgCGGggCUGGUg -5'
22269 3' -57.5 NC_005045.1 + 28807 0.66 0.545045
Target:  5'- aCCGGCCACcagcggggacCGuuGCCCCG-CCGu -3'
miRNA:   3'- -GGCUGGUGuau-------GUggCGGGGCuGGUg -5'
22269 3' -57.5 NC_005045.1 + 19244 0.66 0.536547
Target:  5'- aCGugCAUcgggaaGUACACUGCCuuG-CCAUg -3'
miRNA:   3'- gGCugGUG------UAUGUGGCGGggCuGGUG- -5'
22269 3' -57.5 NC_005045.1 + 21507 0.66 0.536547
Target:  5'- gCCGauGCCACugGCACCgGCaCUCGACgACg -3'
miRNA:   3'- -GGC--UGGUGuaUGUGG-CG-GGGCUGgUG- -5'
22269 3' -57.5 NC_005045.1 + 14066 0.66 0.525991
Target:  5'- cCUGGCCAacaAgGCUGCCgaGACCGCa -3'
miRNA:   3'- -GGCUGGUguaUgUGGCGGggCUGGUG- -5'
22269 3' -57.5 NC_005045.1 + 12112 0.66 0.525991
Target:  5'- uCCGGCCAUcuucguacgGCACCcgGCCCUuguACCGCa -3'
miRNA:   3'- -GGCUGGUGua-------UGUGG--CGGGGc--UGGUG- -5'
22269 3' -57.5 NC_005045.1 + 26329 0.66 0.52494
Target:  5'- aCG-CCACGgGCACCaccuacaGCCacaCGGCCACu -3'
miRNA:   3'- gGCuGGUGUaUGUGG-------CGGg--GCUGGUG- -5'
22269 3' -57.5 NC_005045.1 + 40081 0.66 0.515514
Target:  5'- aCCGACCGaggcuCACUGCCgaaggaCGACCGg -3'
miRNA:   3'- -GGCUGGUguau-GUGGCGGg-----GCUGGUg -5'
22269 3' -57.5 NC_005045.1 + 8449 0.66 0.515514
Target:  5'- aUCGACCugGCGUAUgaGCUGCgCCGGCUgaGCg -3'
miRNA:   3'- -GGCUGG--UGUAUG--UGGCGgGGCUGG--UG- -5'
22269 3' -57.5 NC_005045.1 + 38077 0.66 0.515514
Target:  5'- -aGACCAgaaccugcgccCAgGCGCUGCCCUcuGGCCGCc -3'
miRNA:   3'- ggCUGGU-----------GUaUGUGGCGGGG--CUGGUG- -5'
22269 3' -57.5 NC_005045.1 + 39265 0.66 0.514471
Target:  5'- -aGGCCACAacccgcGCACCggcaaggGCCUCGACgGCa -3'
miRNA:   3'- ggCUGGUGUa-----UGUGG-------CGGGGCUGgUG- -5'
22269 3' -57.5 NC_005045.1 + 20212 0.67 0.505122
Target:  5'- gCC-ACCugGgACugACCGCCCUGGCCuGCg -3'
miRNA:   3'- -GGcUGGugUaUG--UGGCGGGGCUGG-UG- -5'
22269 3' -57.5 NC_005045.1 + 41594 0.67 0.505122
Target:  5'- uCCGGugGgGUaGCGCCGCCCUcGCCGCc -3'
miRNA:   3'- -GGCUggUgUA-UGUGGCGGGGcUGGUG- -5'
22269 3' -57.5 NC_005045.1 + 31045 0.67 0.494822
Target:  5'- gCUGACCuugACGUugGCACCguacucggcGCCCCGcAUCGCa -3'
miRNA:   3'- -GGCUGG---UGUA--UGUGG---------CGGGGC-UGGUG- -5'
22269 3' -57.5 NC_005045.1 + 14144 0.67 0.494822
Target:  5'- cCCGGCgG---GCACCGCCaUgGGCCGCu -3'
miRNA:   3'- -GGCUGgUguaUGUGGCGG-GgCUGGUG- -5'
22269 3' -57.5 NC_005045.1 + 10119 0.67 0.488688
Target:  5'- aCGAUCACGUACccguucuucuugaugAUgGCCUCGACgGCc -3'
miRNA:   3'- gGCUGGUGUAUG---------------UGgCGGGGCUGgUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.