Results 1 - 20 of 53 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
22276 | 3' | -54 | NC_005045.1 | + | 35957 | 0.66 | 0.713233 |
Target: 5'- aGGCgCuGCGcCGUGCCCugGGCUUcGCCg -3' miRNA: 3'- gUCGgGuCGUuGUAUGGG--CUGAA-CGG- -5' |
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22276 | 3' | -54 | NC_005045.1 | + | 33650 | 0.66 | 0.713233 |
Target: 5'- -uGCCUacGGUAGCGUccgcguagACCCGAaccUGCCg -3' miRNA: 3'- guCGGG--UCGUUGUA--------UGGGCUga-ACGG- -5' |
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22276 | 3' | -54 | NC_005045.1 | + | 33031 | 0.66 | 0.713233 |
Target: 5'- cCGGCC-AGCAGCGUcuccucgaACUCGGacagUUGCCg -3' miRNA: 3'- -GUCGGgUCGUUGUA--------UGGGCUg---AACGG- -5' |
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22276 | 3' | -54 | NC_005045.1 | + | 29874 | 0.66 | 0.713233 |
Target: 5'- -cGCuCCAGCGGCccuCCuCGACcaUGCCa -3' miRNA: 3'- guCG-GGUCGUUGuauGG-GCUGa-ACGG- -5' |
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22276 | 3' | -54 | NC_005045.1 | + | 35352 | 0.66 | 0.713233 |
Target: 5'- gAGgCCGGCAGUGUAgCCGA--UGCCg -3' miRNA: 3'- gUCgGGUCGUUGUAUgGGCUgaACGG- -5' |
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22276 | 3' | -54 | NC_005045.1 | + | 22670 | 0.66 | 0.713233 |
Target: 5'- -cGCCUGGUucaGACGUACgacuaCGGCUUGCa -3' miRNA: 3'- guCGGGUCG---UUGUAUGg----GCUGAACGg -5' |
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22276 | 3' | -54 | NC_005045.1 | + | 23168 | 0.66 | 0.712124 |
Target: 5'- gGGCCUcGCuaaccugguugccAACAUAccCCCGGC-UGCCg -3' miRNA: 3'- gUCGGGuCG-------------UUGUAU--GGGCUGaACGG- -5' |
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22276 | 3' | -54 | NC_005045.1 | + | 28260 | 0.66 | 0.702099 |
Target: 5'- aCAGCUCAGCucgaacuugGACGUgGCCauauCGACccgUGCCg -3' miRNA: 3'- -GUCGGGUCG---------UUGUA-UGG----GCUGa--ACGG- -5' |
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22276 | 3' | -54 | NC_005045.1 | + | 15043 | 0.66 | 0.702099 |
Target: 5'- -uGuCCCGGUAAU---CCCGGCggUGCCg -3' miRNA: 3'- guC-GGGUCGUUGuauGGGCUGa-ACGG- -5' |
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22276 | 3' | -54 | NC_005045.1 | + | 32625 | 0.66 | 0.702099 |
Target: 5'- gGGCCUggGGCAGCGUACcgcguuCCGugUggUGCa -3' miRNA: 3'- gUCGGG--UCGUUGUAUG------GGCugA--ACGg -5' |
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22276 | 3' | -54 | NC_005045.1 | + | 15003 | 0.66 | 0.702099 |
Target: 5'- uGGCCCcgguGGCGGCu--CCCG-C-UGCCg -3' miRNA: 3'- gUCGGG----UCGUUGuauGGGCuGaACGG- -5' |
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22276 | 3' | -54 | NC_005045.1 | + | 14661 | 0.66 | 0.700982 |
Target: 5'- aGGUCCAGCGGCAguUCCGguacauuguacggGC-UGCCa -3' miRNA: 3'- gUCGGGUCGUUGUauGGGC-------------UGaACGG- -5' |
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22276 | 3' | -54 | NC_005045.1 | + | 18211 | 0.66 | 0.690893 |
Target: 5'- gGGgCCGGCAGCcaaGCuCCGgcACUUGCUg -3' miRNA: 3'- gUCgGGUCGUUGua-UG-GGC--UGAACGG- -5' |
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22276 | 3' | -54 | NC_005045.1 | + | 34332 | 0.66 | 0.679626 |
Target: 5'- gAGUCCccCGGCAUACCUGcGCggGCCa -3' miRNA: 3'- gUCGGGucGUUGUAUGGGC-UGaaCGG- -5' |
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22276 | 3' | -54 | NC_005045.1 | + | 24973 | 0.66 | 0.679626 |
Target: 5'- aCGGCCCAGCGGguggGCUgCGA-UUGCCu -3' miRNA: 3'- -GUCGGGUCGUUgua-UGG-GCUgAACGG- -5' |
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22276 | 3' | -54 | NC_005045.1 | + | 25893 | 0.66 | 0.66831 |
Target: 5'- cCAGCUCAGCgAGCAgaucaacauggUAUCCGAUcccgUGUCa -3' miRNA: 3'- -GUCGGGUCG-UUGU-----------AUGGGCUGa---ACGG- -5' |
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22276 | 3' | -54 | NC_005045.1 | + | 25966 | 0.66 | 0.66831 |
Target: 5'- uGGCCCAccuGCuGCAUACC-GACcaGCCc -3' miRNA: 3'- gUCGGGU---CGuUGUAUGGgCUGaaCGG- -5' |
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22276 | 3' | -54 | NC_005045.1 | + | 4280 | 0.66 | 0.663773 |
Target: 5'- uCAGCCCGGuCAGUAggcCCCGGCcuacugcacguagUGCCa -3' miRNA: 3'- -GUCGGGUC-GUUGUau-GGGCUGa------------ACGG- -5' |
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22276 | 3' | -54 | NC_005045.1 | + | 5653 | 0.67 | 0.645581 |
Target: 5'- aGGCgUgGGCGA-AUGCCCGGCUcuugGCCa -3' miRNA: 3'- gUCG-GgUCGUUgUAUGGGCUGAa---CGG- -5' |
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22276 | 3' | -54 | NC_005045.1 | + | 41218 | 0.67 | 0.634191 |
Target: 5'- aCAGCCUGuGCAACcgcCCCGGCgcccgcugUGCUg -3' miRNA: 3'- -GUCGGGU-CGUUGuauGGGCUGa-------ACGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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