miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22276 3' -54 NC_005045.1 + 35957 0.66 0.713233
Target:  5'- aGGCgCuGCGcCGUGCCCugGGCUUcGCCg -3'
miRNA:   3'- gUCGgGuCGUuGUAUGGG--CUGAA-CGG- -5'
22276 3' -54 NC_005045.1 + 33650 0.66 0.713233
Target:  5'- -uGCCUacGGUAGCGUccgcguagACCCGAaccUGCCg -3'
miRNA:   3'- guCGGG--UCGUUGUA--------UGGGCUga-ACGG- -5'
22276 3' -54 NC_005045.1 + 33031 0.66 0.713233
Target:  5'- cCGGCC-AGCAGCGUcuccucgaACUCGGacagUUGCCg -3'
miRNA:   3'- -GUCGGgUCGUUGUA--------UGGGCUg---AACGG- -5'
22276 3' -54 NC_005045.1 + 29874 0.66 0.713233
Target:  5'- -cGCuCCAGCGGCccuCCuCGACcaUGCCa -3'
miRNA:   3'- guCG-GGUCGUUGuauGG-GCUGa-ACGG- -5'
22276 3' -54 NC_005045.1 + 35352 0.66 0.713233
Target:  5'- gAGgCCGGCAGUGUAgCCGA--UGCCg -3'
miRNA:   3'- gUCgGGUCGUUGUAUgGGCUgaACGG- -5'
22276 3' -54 NC_005045.1 + 22670 0.66 0.713233
Target:  5'- -cGCCUGGUucaGACGUACgacuaCGGCUUGCa -3'
miRNA:   3'- guCGGGUCG---UUGUAUGg----GCUGAACGg -5'
22276 3' -54 NC_005045.1 + 23168 0.66 0.712124
Target:  5'- gGGCCUcGCuaaccugguugccAACAUAccCCCGGC-UGCCg -3'
miRNA:   3'- gUCGGGuCG-------------UUGUAU--GGGCUGaACGG- -5'
22276 3' -54 NC_005045.1 + 28260 0.66 0.702099
Target:  5'- aCAGCUCAGCucgaacuugGACGUgGCCauauCGACccgUGCCg -3'
miRNA:   3'- -GUCGGGUCG---------UUGUA-UGG----GCUGa--ACGG- -5'
22276 3' -54 NC_005045.1 + 15043 0.66 0.702099
Target:  5'- -uGuCCCGGUAAU---CCCGGCggUGCCg -3'
miRNA:   3'- guC-GGGUCGUUGuauGGGCUGa-ACGG- -5'
22276 3' -54 NC_005045.1 + 32625 0.66 0.702099
Target:  5'- gGGCCUggGGCAGCGUACcgcguuCCGugUggUGCa -3'
miRNA:   3'- gUCGGG--UCGUUGUAUG------GGCugA--ACGg -5'
22276 3' -54 NC_005045.1 + 15003 0.66 0.702099
Target:  5'- uGGCCCcgguGGCGGCu--CCCG-C-UGCCg -3'
miRNA:   3'- gUCGGG----UCGUUGuauGGGCuGaACGG- -5'
22276 3' -54 NC_005045.1 + 14661 0.66 0.700982
Target:  5'- aGGUCCAGCGGCAguUCCGguacauuguacggGC-UGCCa -3'
miRNA:   3'- gUCGGGUCGUUGUauGGGC-------------UGaACGG- -5'
22276 3' -54 NC_005045.1 + 18211 0.66 0.690893
Target:  5'- gGGgCCGGCAGCcaaGCuCCGgcACUUGCUg -3'
miRNA:   3'- gUCgGGUCGUUGua-UG-GGC--UGAACGG- -5'
22276 3' -54 NC_005045.1 + 34332 0.66 0.679626
Target:  5'- gAGUCCccCGGCAUACCUGcGCggGCCa -3'
miRNA:   3'- gUCGGGucGUUGUAUGGGC-UGaaCGG- -5'
22276 3' -54 NC_005045.1 + 24973 0.66 0.679626
Target:  5'- aCGGCCCAGCGGguggGCUgCGA-UUGCCu -3'
miRNA:   3'- -GUCGGGUCGUUgua-UGG-GCUgAACGG- -5'
22276 3' -54 NC_005045.1 + 25893 0.66 0.66831
Target:  5'- cCAGCUCAGCgAGCAgaucaacauggUAUCCGAUcccgUGUCa -3'
miRNA:   3'- -GUCGGGUCG-UUGU-----------AUGGGCUGa---ACGG- -5'
22276 3' -54 NC_005045.1 + 25966 0.66 0.66831
Target:  5'- uGGCCCAccuGCuGCAUACC-GACcaGCCc -3'
miRNA:   3'- gUCGGGU---CGuUGUAUGGgCUGaaCGG- -5'
22276 3' -54 NC_005045.1 + 4280 0.66 0.663773
Target:  5'- uCAGCCCGGuCAGUAggcCCCGGCcuacugcacguagUGCCa -3'
miRNA:   3'- -GUCGGGUC-GUUGUau-GGGCUGa------------ACGG- -5'
22276 3' -54 NC_005045.1 + 5653 0.67 0.645581
Target:  5'- aGGCgUgGGCGA-AUGCCCGGCUcuugGCCa -3'
miRNA:   3'- gUCG-GgUCGUUgUAUGGGCUGAa---CGG- -5'
22276 3' -54 NC_005045.1 + 41218 0.67 0.634191
Target:  5'- aCAGCCUGuGCAACcgcCCCGGCgcccgcugUGCUg -3'
miRNA:   3'- -GUCGGGU-CGUUGuauGGGCUGa-------ACGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.