miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22357 3' -55.6 NC_005045.1 + 34576 0.66 0.617759
Target:  5'- aGACGCccugccGguGGGcCAUCGUGGCcaGCu -3'
miRNA:   3'- gUUGCGua----CguCCC-GUAGUACCGc-CG- -5'
22357 3' -55.6 NC_005045.1 + 9650 0.66 0.617759
Target:  5'- cCGACGCAgGUgAGGGCGguaucuUCAagGGCGuGCu -3'
miRNA:   3'- -GUUGCGUaCG-UCCCGU------AGUa-CCGC-CG- -5'
22357 3' -55.6 NC_005045.1 + 2524 0.66 0.617759
Target:  5'- cCAGCGCAuUGCGGcGGCugcCAUuaGGCauGGCu -3'
miRNA:   3'- -GUUGCGU-ACGUC-CCGua-GUA--CCG--CCG- -5'
22357 3' -55.6 NC_005045.1 + 32575 0.66 0.606456
Target:  5'- --cCGCuc-CAGGGCAUCGccgccaaGGUGGCu -3'
miRNA:   3'- guuGCGuacGUCCCGUAGUa------CCGCCG- -5'
22357 3' -55.6 NC_005045.1 + 26561 0.66 0.606456
Target:  5'- aCGGgGCGUGCAGGacggguacaucGCAUucCGUGGCGacGCc -3'
miRNA:   3'- -GUUgCGUACGUCC-----------CGUA--GUACCGC--CG- -5'
22357 3' -55.6 NC_005045.1 + 4141 0.66 0.606456
Target:  5'- gGACGCAUGCgugaucGGGuGCAUC-UGGCc-- -3'
miRNA:   3'- gUUGCGUACG------UCC-CGUAGuACCGccg -5'
22357 3' -55.6 NC_005045.1 + 12446 0.66 0.606456
Target:  5'- gCGACGCccucaagGCucuggagaaacAGGGCuUCGaGGCGGCc -3'
miRNA:   3'- -GUUGCGua-----CG-----------UCCCGuAGUaCCGCCG- -5'
22357 3' -55.6 NC_005045.1 + 29939 0.66 0.605327
Target:  5'- --cUGCAUGCGuuGGGCAuugcccaggccggUCAUGGCcuuGGUc -3'
miRNA:   3'- guuGCGUACGU--CCCGU-------------AGUACCG---CCG- -5'
22357 3' -55.6 NC_005045.1 + 32690 0.66 0.595177
Target:  5'- gAACGCGguacgcugccccagGCccuccagggucuugAGGGUGUCAgccaccuUGGCGGCg -3'
miRNA:   3'- gUUGCGUa-------------CG--------------UCCCGUAGU-------ACCGCCG- -5'
22357 3' -55.6 NC_005045.1 + 16687 0.66 0.583931
Target:  5'- cCGGCGCcgu--GGGCAaCGUGGuCGGCc -3'
miRNA:   3'- -GUUGCGuacguCCCGUaGUACC-GCCG- -5'
22357 3' -55.6 NC_005045.1 + 19854 0.66 0.583931
Target:  5'- cCAGCGuCAUaCAGGGCuUCuUGGUcaGGCu -3'
miRNA:   3'- -GUUGC-GUAcGUCCCGuAGuACCG--CCG- -5'
22357 3' -55.6 NC_005045.1 + 23855 0.66 0.582809
Target:  5'- aGACGCcgGCAGccugcuucaggacGGCcUCAccaccgacGGCGGCa -3'
miRNA:   3'- gUUGCGuaCGUC-------------CCGuAGUa-------CCGCCG- -5'
22357 3' -55.6 NC_005045.1 + 29991 0.66 0.577204
Target:  5'- cCAGCGUGUGUAGGGCGuugaugucccccgcuUCcagGGCcGCc -3'
miRNA:   3'- -GUUGCGUACGUCCCGU---------------AGua-CCGcCG- -5'
22357 3' -55.6 NC_005045.1 + 6462 0.66 0.572728
Target:  5'- uCGACgGCAaGCGggcgaccuGGGaCAagGUGGCGGCg -3'
miRNA:   3'- -GUUG-CGUaCGU--------CCC-GUagUACCGCCG- -5'
22357 3' -55.6 NC_005045.1 + 24727 0.67 0.550484
Target:  5'- gCggUGCAUGCGGacgaucuugucGGCAgcuugCuUGGCGGUc -3'
miRNA:   3'- -GuuGCGUACGUC-----------CCGUa----GuACCGCCG- -5'
22357 3' -55.6 NC_005045.1 + 32192 0.67 0.539461
Target:  5'- cCGACGUggAUGCcGGaaccuaCAUCGUGGCGGg -3'
miRNA:   3'- -GUUGCG--UACGuCCc-----GUAGUACCGCCg -5'
22357 3' -55.6 NC_005045.1 + 26721 0.67 0.539461
Target:  5'- ---gGUGUGgGGGuGCAguUCAUGGaCGGCg -3'
miRNA:   3'- guugCGUACgUCC-CGU--AGUACC-GCCG- -5'
22357 3' -55.6 NC_005045.1 + 33527 0.67 0.539461
Target:  5'- gAugGCugaGCAGGGCGU--UGGCcugacGGCa -3'
miRNA:   3'- gUugCGua-CGUCCCGUAguACCG-----CCG- -5'
22357 3' -55.6 NC_005045.1 + 9456 0.67 0.528513
Target:  5'- uGAUGCAcgGCccaacgAGGGCGUCGcccUGGcCGGUg -3'
miRNA:   3'- gUUGCGUa-CG------UCCCGUAGU---ACC-GCCG- -5'
22357 3' -55.6 NC_005045.1 + 18594 0.67 0.517648
Target:  5'- cCAAcCGCuucaCAGGGCGg---GGCGGCa -3'
miRNA:   3'- -GUU-GCGuac-GUCCCGUaguaCCGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.