miRNA display CGI


Results 1 - 20 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22365 3' -55.2 NC_005045.1 + 26174 0.66 0.67737
Target:  5'- -gGugGCCGAUGaccuguUCAUCGCcaaccugaguguaaaGCccgAGGCCg -3'
miRNA:   3'- gaCugCGGCUAU------GGUAGCG---------------UG---UCCGG- -5'
22365 3' -55.2 NC_005045.1 + 34576 0.66 0.672929
Target:  5'- -aGACgcccuGCCGGUggGCCAUCGU---GGCCa -3'
miRNA:   3'- gaCUG-----CGGCUA--UGGUAGCGuguCCGG- -5'
22365 3' -55.2 NC_005045.1 + 22411 0.66 0.6618
Target:  5'- -cGugGCCGcgACCGUaGUGCucGCCa -3'
miRNA:   3'- gaCugCGGCuaUGGUAgCGUGucCGG- -5'
22365 3' -55.2 NC_005045.1 + 30491 0.66 0.6618
Target:  5'- uCUGAgcauguacCGCCGGgcgACCAUCG-ACgAGGCg -3'
miRNA:   3'- -GACU--------GCGGCUa--UGGUAGCgUG-UCCGg -5'
22365 3' -55.2 NC_005045.1 + 33857 0.66 0.650643
Target:  5'- gCUGGCccGCCGA-GCCAUCaGCG-AGGCa -3'
miRNA:   3'- -GACUG--CGGCUaUGGUAG-CGUgUCCGg -5'
22365 3' -55.2 NC_005045.1 + 23232 0.66 0.650643
Target:  5'- gUGAUGCCGAacCCGgugauccaGCAgCAGGCUc -3'
miRNA:   3'- gACUGCGGCUauGGUag------CGU-GUCCGG- -5'
22365 3' -55.2 NC_005045.1 + 29947 0.66 0.650643
Target:  5'- aUGAUGCCcugcAUGCguugggCAUUGCcCAGGCCg -3'
miRNA:   3'- gACUGCGGc---UAUG------GUAGCGuGUCCGG- -5'
22365 3' -55.2 NC_005045.1 + 38926 0.66 0.639467
Target:  5'- -gGugGCCGAggUACgGUCaCccauGCGGGCCu -3'
miRNA:   3'- gaCugCGGCU--AUGgUAGcG----UGUCCGG- -5'
22365 3' -55.2 NC_005045.1 + 21460 0.66 0.639467
Target:  5'- uUGAccucacCGCCGAgaaCGUgGCGCAGGUUg -3'
miRNA:   3'- gACU------GCGGCUaugGUAgCGUGUCCGG- -5'
22365 3' -55.2 NC_005045.1 + 22020 0.66 0.639467
Target:  5'- -cGACGCCGcUACggugGUCGCAU-GGUCg -3'
miRNA:   3'- gaCUGCGGCuAUGg---UAGCGUGuCCGG- -5'
22365 3' -55.2 NC_005045.1 + 21188 0.66 0.639467
Target:  5'- -aGACGUac-UGCCAcugugcggucaCGCACGGGCCg -3'
miRNA:   3'- gaCUGCGgcuAUGGUa----------GCGUGUCCGG- -5'
22365 3' -55.2 NC_005045.1 + 4127 0.66 0.632758
Target:  5'- -aGGCGCC--UGCCAgcaggccgaggcagCaGUACAGGCCg -3'
miRNA:   3'- gaCUGCGGcuAUGGUa-------------G-CGUGUCCGG- -5'
22365 3' -55.2 NC_005045.1 + 41362 0.67 0.617107
Target:  5'- cCUGAUagGCCGcUACag-CGCGgauCAGGCCa -3'
miRNA:   3'- -GACUG--CGGCuAUGguaGCGU---GUCCGG- -5'
22365 3' -55.2 NC_005045.1 + 20223 0.67 0.617107
Target:  5'- -cGAUGCCGuUGgCGUUGCGCAuggGGUCc -3'
miRNA:   3'- gaCUGCGGCuAUgGUAGCGUGU---CCGG- -5'
22365 3' -55.2 NC_005045.1 + 41470 0.67 0.617107
Target:  5'- -cGAgGCCGAUGUCAagGCcaAGGCCa -3'
miRNA:   3'- gaCUgCGGCUAUGGUagCGugUCCGG- -5'
22365 3' -55.2 NC_005045.1 + 30970 0.67 0.617107
Target:  5'- -gGGCGCCGAguacggUGCCAaCGUcaAGGUCa -3'
miRNA:   3'- gaCUGCGGCU------AUGGUaGCGugUCCGG- -5'
22365 3' -55.2 NC_005045.1 + 6944 0.67 0.617107
Target:  5'- -cGGCGCUGA-ACUg--GUACGGGCCg -3'
miRNA:   3'- gaCUGCGGCUaUGGuagCGUGUCCGG- -5'
22365 3' -55.2 NC_005045.1 + 32070 0.67 0.615989
Target:  5'- cCUGGCaGuuGAUGCgGUUacuuucgGCGCuGGCCg -3'
miRNA:   3'- -GACUG-CggCUAUGgUAG-------CGUGuCCGG- -5'
22365 3' -55.2 NC_005045.1 + 23346 0.67 0.613755
Target:  5'- aUGACGCCGcacUACCAgcCGguggcggugccugcCGCAGGUCa -3'
miRNA:   3'- gACUGCGGCu--AUGGUa-GC--------------GUGUCCGG- -5'
22365 3' -55.2 NC_005045.1 + 41153 0.67 0.604826
Target:  5'- gUGGCGCUgcaaGGUGgcauaacgcaccuCCAgggccucCGCACGGGCCg -3'
miRNA:   3'- gACUGCGG----CUAU-------------GGUa------GCGUGUCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.