miRNA display CGI


Results 21 - 40 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22365 3' -55.2 NC_005045.1 + 6991 0.69 0.501205
Target:  5'- --aGCGCCGAUACCcugccugcugugccgGUCgucaacGCACAgGGCCu -3'
miRNA:   3'- gacUGCGGCUAUGG---------------UAG------CGUGU-CCGG- -5'
22365 3' -55.2 NC_005045.1 + 11800 0.69 0.445819
Target:  5'- -gGGCGguauucUCGAUGUCAcCGCACGGGCCg -3'
miRNA:   3'- gaCUGC------GGCUAUGGUaGCGUGUCCGG- -5'
22365 3' -55.2 NC_005045.1 + 20223 0.67 0.617107
Target:  5'- -cGAUGCCGuUGgCGUUGCGCAuggGGUCc -3'
miRNA:   3'- gaCUGCGGCuAUgGUAGCGUGU---CCGG- -5'
22365 3' -55.2 NC_005045.1 + 34019 0.68 0.527859
Target:  5'- -gGAUGCCGGUagcccugucccgcGCCcgCuGCACAauGGCCu -3'
miRNA:   3'- gaCUGCGGCUA-------------UGGuaG-CGUGU--CCGG- -5'
22365 3' -55.2 NC_005045.1 + 39757 0.69 0.445819
Target:  5'- -aGcCGCCGAUGCUcacgacGUggaUGUACGGGCCa -3'
miRNA:   3'- gaCuGCGGCUAUGG------UA---GCGUGUCCGG- -5'
22365 3' -55.2 NC_005045.1 + 41362 0.67 0.617107
Target:  5'- cCUGAUagGCCGcUACag-CGCGgauCAGGCCa -3'
miRNA:   3'- -GACUG--CGGCuAUGguaGCGU---GUCCGG- -5'
22365 3' -55.2 NC_005045.1 + 26281 0.7 0.426185
Target:  5'- uUGAUGUCGGUGCgGUCGgccuCGGGCUu -3'
miRNA:   3'- gACUGCGGCUAUGgUAGCgu--GUCCGG- -5'
22365 3' -55.2 NC_005045.1 + 10386 0.7 0.416562
Target:  5'- gUGGCGUCGaAUACCGcgaaGUGCAGGCa -3'
miRNA:   3'- gACUGCGGC-UAUGGUag--CGUGUCCGg -5'
22365 3' -55.2 NC_005045.1 + 21573 0.68 0.539755
Target:  5'- -cGAgUGCCGGUGCaGUgGCAUcGGCCa -3'
miRNA:   3'- gaCU-GCGGCUAUGgUAgCGUGuCCGG- -5'
22365 3' -55.2 NC_005045.1 + 29947 0.66 0.650643
Target:  5'- aUGAUGCCcugcAUGCguugggCAUUGCcCAGGCCg -3'
miRNA:   3'- gACUGCGGc---UAUG------GUAGCGuGUCCGG- -5'
22365 3' -55.2 NC_005045.1 + 32472 0.69 0.496994
Target:  5'- -gGACaGCaCGGUGCCcUCGUccaGCAGGUCu -3'
miRNA:   3'- gaCUG-CG-GCUAUGGuAGCG---UGUCCGG- -5'
22365 3' -55.2 NC_005045.1 + 2942 0.69 0.476188
Target:  5'- --cAUGCgGAaGCCAuggUCGCACAGcGCCa -3'
miRNA:   3'- gacUGCGgCUaUGGU---AGCGUGUC-CGG- -5'
22365 3' -55.2 NC_005045.1 + 10464 0.67 0.572623
Target:  5'- aUGAgGCUGcggACCAUgGCGCGGcGCUc -3'
miRNA:   3'- gACUgCGGCua-UGGUAgCGUGUC-CGG- -5'
22365 3' -55.2 NC_005045.1 + 4127 0.66 0.632758
Target:  5'- -aGGCGCC--UGCCAgcaggccgaggcagCaGUACAGGCCg -3'
miRNA:   3'- gaCUGCGGcuAUGGUa-------------G-CGUGUCCGG- -5'
22365 3' -55.2 NC_005045.1 + 6184 0.67 0.572623
Target:  5'- gCUGAgGCCGAgGCUcgUGaGCGGGCg -3'
miRNA:   3'- -GACUgCGGCUaUGGuaGCgUGUCCGg -5'
22365 3' -55.2 NC_005045.1 + 29754 0.67 0.561606
Target:  5'- -gGugGCCaacGGUGCCAucacagaccUCGCugAGGUUg -3'
miRNA:   3'- gaCugCGG---CUAUGGU---------AGCGugUCCGG- -5'
22365 3' -55.2 NC_005045.1 + 23232 0.66 0.650643
Target:  5'- gUGAUGCCGAacCCGgugauccaGCAgCAGGCUc -3'
miRNA:   3'- gACUGCGGCUauGGUag------CGU-GUCCGG- -5'
22365 3' -55.2 NC_005045.1 + 21502 0.7 0.426185
Target:  5'- -cGAUgGCCGAUGCCAcUgGCACcGGCa -3'
miRNA:   3'- gaCUG-CGGCUAUGGU-AgCGUGuCCGg -5'
22365 3' -55.2 NC_005045.1 + 22020 0.66 0.639467
Target:  5'- -cGACGCCGcUACggugGUCGCAU-GGUCg -3'
miRNA:   3'- gaCUGCGGCuAUGg---UAGCGUGuCCGG- -5'
22365 3' -55.2 NC_005045.1 + 33857 0.66 0.650643
Target:  5'- gCUGGCccGCCGA-GCCAUCaGCG-AGGCa -3'
miRNA:   3'- -GACUG--CGGCUaUGGUAG-CGUgUCCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.