miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22370 3' -51.4 NC_005045.1 + 35946 0.66 0.843293
Target:  5'- -cGCCGCcaaUGaGGcGCugCGCCGUGCc -3'
miRNA:   3'- guUGGCGa--ACgUCuUGugGUGGUACG- -5'
22370 3' -51.4 NC_005045.1 + 36480 0.66 0.843293
Target:  5'- ---aUGCUugUGCGGGACGCUACCcUGa -3'
miRNA:   3'- guugGCGA--ACGUCUUGUGGUGGuACg -5'
22370 3' -51.4 NC_005045.1 + 6838 0.66 0.843293
Target:  5'- cCAGCCauuccgGCggagGUGGAGCACaCACUcgGCg -3'
miRNA:   3'- -GUUGG------CGaa--CGUCUUGUG-GUGGuaCG- -5'
22370 3' -51.4 NC_005045.1 + 39889 0.66 0.843293
Target:  5'- gCAugUGgUUGCGGAagagcugaccaACugCACCA-GCg -3'
miRNA:   3'- -GUugGCgAACGUCU-----------UGugGUGGUaCG- -5'
22370 3' -51.4 NC_005045.1 + 33259 0.66 0.824465
Target:  5'- uGACCGaggagGCuagccuGGAgACCAUCGUGCa -3'
miRNA:   3'- gUUGGCgaa--CGu-----CUUgUGGUGGUACG- -5'
22370 3' -51.4 NC_005045.1 + 17470 0.66 0.814707
Target:  5'- cCAGCCGCc-GCAGc-CGCCGCagugauaGUGCu -3'
miRNA:   3'- -GUUGGCGaaCGUCuuGUGGUGg------UACG- -5'
22370 3' -51.4 NC_005045.1 + 12490 0.66 0.814707
Target:  5'- -cGCCGCUggUGCuGAACAcgggcgauccauCCGCCAgggugaggGCg -3'
miRNA:   3'- guUGGCGA--ACGuCUUGU------------GGUGGUa-------CG- -5'
22370 3' -51.4 NC_005045.1 + 38206 0.66 0.814707
Target:  5'- aGACCGCgagUGCuGAGCGgCUggGCC-UGCu -3'
miRNA:   3'- gUUGGCGa--ACGuCUUGU-GG--UGGuACG- -5'
22370 3' -51.4 NC_005045.1 + 13495 0.66 0.814707
Target:  5'- cCGACUGCcacaAGGACACCGCCGc-- -3'
miRNA:   3'- -GUUGGCGaacgUCUUGUGGUGGUacg -5'
22370 3' -51.4 NC_005045.1 + 2318 0.66 0.804736
Target:  5'- uCAACCGC--GCuaucGACGCCAuCCGUGUc -3'
miRNA:   3'- -GUUGGCGaaCGuc--UUGUGGU-GGUACG- -5'
22370 3' -51.4 NC_005045.1 + 18425 0.66 0.804736
Target:  5'- cCAACCGgaCUUcgaucucgcgGCAGAGCAUCuugcCCAUGUg -3'
miRNA:   3'- -GUUGGC--GAA----------CGUCUUGUGGu---GGUACG- -5'
22370 3' -51.4 NC_005045.1 + 2911 0.67 0.794563
Target:  5'- uCGGCUGCgUUGCAGcGGC-CCGCCggGUc -3'
miRNA:   3'- -GUUGGCG-AACGUC-UUGuGGUGGuaCG- -5'
22370 3' -51.4 NC_005045.1 + 14131 0.67 0.784201
Target:  5'- gCggUCGCaucuucccgGCGG-GCACCGCCAUGg -3'
miRNA:   3'- -GuuGGCGaa-------CGUCuUGUGGUGGUACg -5'
22370 3' -51.4 NC_005045.1 + 20830 0.67 0.784201
Target:  5'- gCAGuCCGCUUGCGccgccgaGACGCCAUCGcaguggaguUGCg -3'
miRNA:   3'- -GUU-GGCGAACGUc------UUGUGGUGGU---------ACG- -5'
22370 3' -51.4 NC_005045.1 + 32820 0.67 0.773663
Target:  5'- -uACCGUcgGCGugauGAACGCUGCCcUGCg -3'
miRNA:   3'- guUGGCGaaCGU----CUUGUGGUGGuACG- -5'
22370 3' -51.4 NC_005045.1 + 32757 0.67 0.762962
Target:  5'- -cACCGCUccaggacgUGUAG-GCACCaacccggugACCGUGCu -3'
miRNA:   3'- guUGGCGA--------ACGUCuUGUGG---------UGGUACG- -5'
22370 3' -51.4 NC_005045.1 + 32304 0.67 0.762962
Target:  5'- aGACC-CcaGCAGAGCACCcacGCCA-GCg -3'
miRNA:   3'- gUUGGcGaaCGUCUUGUGG---UGGUaCG- -5'
22370 3' -51.4 NC_005045.1 + 23847 0.67 0.762962
Target:  5'- gCAGCCuGCUU-CAGGACggccucACCACCGacgGCg -3'
miRNA:   3'- -GUUGG-CGAAcGUCUUG------UGGUGGUa--CG- -5'
22370 3' -51.4 NC_005045.1 + 28531 0.67 0.762962
Target:  5'- aCGGCuUGCUUGCGGuAGCuaGCgGCCAUGa -3'
miRNA:   3'- -GUUG-GCGAACGUC-UUG--UGgUGGUACg -5'
22370 3' -51.4 NC_005045.1 + 4065 0.67 0.752112
Target:  5'- uCGGCCuGCUgGCAG-GCGCCugCuacUGCa -3'
miRNA:   3'- -GUUGG-CGAaCGUCuUGUGGugGu--ACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.