Results 1 - 20 of 50 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
22370 | 3' | -51.4 | NC_005045.1 | + | 36480 | 0.66 | 0.843293 |
Target: 5'- ---aUGCUugUGCGGGACGCUACCcUGa -3' miRNA: 3'- guugGCGA--ACGUCUUGUGGUGGuACg -5' |
|||||||
22370 | 3' | -51.4 | NC_005045.1 | + | 39889 | 0.66 | 0.843293 |
Target: 5'- gCAugUGgUUGCGGAagagcugaccaACugCACCA-GCg -3' miRNA: 3'- -GUugGCgAACGUCU-----------UGugGUGGUaCG- -5' |
|||||||
22370 | 3' | -51.4 | NC_005045.1 | + | 35946 | 0.66 | 0.843293 |
Target: 5'- -cGCCGCcaaUGaGGcGCugCGCCGUGCc -3' miRNA: 3'- guUGGCGa--ACgUCuUGugGUGGUACG- -5' |
|||||||
22370 | 3' | -51.4 | NC_005045.1 | + | 6838 | 0.66 | 0.843293 |
Target: 5'- cCAGCCauuccgGCggagGUGGAGCACaCACUcgGCg -3' miRNA: 3'- -GUUGG------CGaa--CGUCUUGUG-GUGGuaCG- -5' |
|||||||
22370 | 3' | -51.4 | NC_005045.1 | + | 33259 | 0.66 | 0.824465 |
Target: 5'- uGACCGaggagGCuagccuGGAgACCAUCGUGCa -3' miRNA: 3'- gUUGGCgaa--CGu-----CUUgUGGUGGUACG- -5' |
|||||||
22370 | 3' | -51.4 | NC_005045.1 | + | 12490 | 0.66 | 0.814707 |
Target: 5'- -cGCCGCUggUGCuGAACAcgggcgauccauCCGCCAgggugaggGCg -3' miRNA: 3'- guUGGCGA--ACGuCUUGU------------GGUGGUa-------CG- -5' |
|||||||
22370 | 3' | -51.4 | NC_005045.1 | + | 17470 | 0.66 | 0.814707 |
Target: 5'- cCAGCCGCc-GCAGc-CGCCGCagugauaGUGCu -3' miRNA: 3'- -GUUGGCGaaCGUCuuGUGGUGg------UACG- -5' |
|||||||
22370 | 3' | -51.4 | NC_005045.1 | + | 38206 | 0.66 | 0.814707 |
Target: 5'- aGACCGCgagUGCuGAGCGgCUggGCC-UGCu -3' miRNA: 3'- gUUGGCGa--ACGuCUUGU-GG--UGGuACG- -5' |
|||||||
22370 | 3' | -51.4 | NC_005045.1 | + | 13495 | 0.66 | 0.814707 |
Target: 5'- cCGACUGCcacaAGGACACCGCCGc-- -3' miRNA: 3'- -GUUGGCGaacgUCUUGUGGUGGUacg -5' |
|||||||
22370 | 3' | -51.4 | NC_005045.1 | + | 2318 | 0.66 | 0.804736 |
Target: 5'- uCAACCGC--GCuaucGACGCCAuCCGUGUc -3' miRNA: 3'- -GUUGGCGaaCGuc--UUGUGGU-GGUACG- -5' |
|||||||
22370 | 3' | -51.4 | NC_005045.1 | + | 18425 | 0.66 | 0.804736 |
Target: 5'- cCAACCGgaCUUcgaucucgcgGCAGAGCAUCuugcCCAUGUg -3' miRNA: 3'- -GUUGGC--GAA----------CGUCUUGUGGu---GGUACG- -5' |
|||||||
22370 | 3' | -51.4 | NC_005045.1 | + | 2911 | 0.67 | 0.794563 |
Target: 5'- uCGGCUGCgUUGCAGcGGC-CCGCCggGUc -3' miRNA: 3'- -GUUGGCG-AACGUC-UUGuGGUGGuaCG- -5' |
|||||||
22370 | 3' | -51.4 | NC_005045.1 | + | 20830 | 0.67 | 0.784201 |
Target: 5'- gCAGuCCGCUUGCGccgccgaGACGCCAUCGcaguggaguUGCg -3' miRNA: 3'- -GUU-GGCGAACGUc------UUGUGGUGGU---------ACG- -5' |
|||||||
22370 | 3' | -51.4 | NC_005045.1 | + | 14131 | 0.67 | 0.784201 |
Target: 5'- gCggUCGCaucuucccgGCGG-GCACCGCCAUGg -3' miRNA: 3'- -GuuGGCGaa-------CGUCuUGUGGUGGUACg -5' |
|||||||
22370 | 3' | -51.4 | NC_005045.1 | + | 32820 | 0.67 | 0.773663 |
Target: 5'- -uACCGUcgGCGugauGAACGCUGCCcUGCg -3' miRNA: 3'- guUGGCGaaCGU----CUUGUGGUGGuACG- -5' |
|||||||
22370 | 3' | -51.4 | NC_005045.1 | + | 28531 | 0.67 | 0.762962 |
Target: 5'- aCGGCuUGCUUGCGGuAGCuaGCgGCCAUGa -3' miRNA: 3'- -GUUG-GCGAACGUC-UUG--UGgUGGUACg -5' |
|||||||
22370 | 3' | -51.4 | NC_005045.1 | + | 32757 | 0.67 | 0.762962 |
Target: 5'- -cACCGCUccaggacgUGUAG-GCACCaacccggugACCGUGCu -3' miRNA: 3'- guUGGCGA--------ACGUCuUGUGG---------UGGUACG- -5' |
|||||||
22370 | 3' | -51.4 | NC_005045.1 | + | 32304 | 0.67 | 0.762962 |
Target: 5'- aGACC-CcaGCAGAGCACCcacGCCA-GCg -3' miRNA: 3'- gUUGGcGaaCGUCUUGUGG---UGGUaCG- -5' |
|||||||
22370 | 3' | -51.4 | NC_005045.1 | + | 23847 | 0.67 | 0.762962 |
Target: 5'- gCAGCCuGCUU-CAGGACggccucACCACCGacgGCg -3' miRNA: 3'- -GUUGG-CGAAcGUCUUG------UGGUGGUa--CG- -5' |
|||||||
22370 | 3' | -51.4 | NC_005045.1 | + | 26118 | 0.67 | 0.752112 |
Target: 5'- aCAGCuCGCcacggUGCu--GCGCCACCA-GCa -3' miRNA: 3'- -GUUG-GCGa----ACGucuUGUGGUGGUaCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home