Results 1 - 20 of 44 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
22372 | 5' | -51.3 | NC_005045.1 | + | 8791 | 0.66 | 0.863754 |
Target: 5'- cACAggAugGGCCGGcCugGGucgaaguACCGCu -3' miRNA: 3'- cUGUuaUugCCGGUCuGugUC-------UGGCG- -5' |
|||||||
22372 | 5' | -51.3 | NC_005045.1 | + | 28816 | 0.66 | 0.855978 |
Target: 5'- cGACAucaGAcCGGCCAccaGCGgGGACCGUu -3' miRNA: 3'- -CUGUua-UU-GCCGGUc--UGUgUCUGGCG- -5' |
|||||||
22372 | 5' | -51.3 | NC_005045.1 | + | 24799 | 0.66 | 0.855978 |
Target: 5'- cGACAuc-GgGGUCAGGCccucggagUAGACCGCa -3' miRNA: 3'- -CUGUuauUgCCGGUCUGu-------GUCUGGCG- -5' |
|||||||
22372 | 5' | -51.3 | NC_005045.1 | + | 32573 | 0.66 | 0.855101 |
Target: 5'- gGACAGcuuACGGCCuGACaggcuguGCAGcUCGCg -3' miRNA: 3'- -CUGUUau-UGCCGGuCUG-------UGUCuGGCG- -5' |
|||||||
22372 | 5' | -51.3 | NC_005045.1 | + | 18678 | 0.66 | 0.855101 |
Target: 5'- cGGCAAUGaccugggGCGGCCcuGGC-CGGAgCGUg -3' miRNA: 3'- -CUGUUAU-------UGCCGGu-CUGuGUCUgGCG- -5' |
|||||||
22372 | 5' | -51.3 | NC_005045.1 | + | 24037 | 0.66 | 0.837961 |
Target: 5'- gGACAG-AGCuGCCAGG-GCAGguGCCGCa -3' miRNA: 3'- -CUGUUaUUGcCGGUCUgUGUC--UGGCG- -5' |
|||||||
22372 | 5' | -51.3 | NC_005045.1 | + | 16218 | 0.66 | 0.837961 |
Target: 5'- cACGAauGCGGCgGGuucCugGGGCUGCa -3' miRNA: 3'- cUGUUauUGCCGgUCu--GugUCUGGCG- -5' |
|||||||
22372 | 5' | -51.3 | NC_005045.1 | + | 9111 | 0.67 | 0.818993 |
Target: 5'- aGCAAcGACGGUCAcGAC-CAGuuguucccACCGCa -3' miRNA: 3'- cUGUUaUUGCCGGU-CUGuGUC--------UGGCG- -5' |
|||||||
22372 | 5' | -51.3 | NC_005045.1 | + | 19599 | 0.67 | 0.816071 |
Target: 5'- gGACGAUGAagccgcuuCGGuaCCccucgggauuccggAGGCAUAGGCCGCg -3' miRNA: 3'- -CUGUUAUU--------GCC--GG--------------UCUGUGUCUGGCG- -5' |
|||||||
22372 | 5' | -51.3 | NC_005045.1 | + | 3115 | 0.67 | 0.80918 |
Target: 5'- uGACAgGUGACaugcCCGGACAgCGGACUGCc -3' miRNA: 3'- -CUGU-UAUUGcc--GGUCUGU-GUCUGGCG- -5' |
|||||||
22372 | 5' | -51.3 | NC_005045.1 | + | 41258 | 0.67 | 0.799162 |
Target: 5'- aACGAcAGCaG-CAGGCACAGGCCGg -3' miRNA: 3'- cUGUUaUUGcCgGUCUGUGUCUGGCg -5' |
|||||||
22372 | 5' | -51.3 | NC_005045.1 | + | 7761 | 0.67 | 0.788952 |
Target: 5'- cGGCAGUAGCGcGCCcaAUcCAGcCCGCg -3' miRNA: 3'- -CUGUUAUUGC-CGGucUGuGUCuGGCG- -5' |
|||||||
22372 | 5' | -51.3 | NC_005045.1 | + | 32072 | 0.67 | 0.788952 |
Target: 5'- uGGCAGUugauGCGGUUAcuuucGGCGCuGGCCGUg -3' miRNA: 3'- -CUGUUAu---UGCCGGU-----CUGUGuCUGGCG- -5' |
|||||||
22372 | 5' | -51.3 | NC_005045.1 | + | 21177 | 0.67 | 0.788952 |
Target: 5'- cACugu-GCGGUCAcGCACGGGCCGa -3' miRNA: 3'- cUGuuauUGCCGGUcUGUGUCUGGCg -5' |
|||||||
22372 | 5' | -51.3 | NC_005045.1 | + | 13541 | 0.67 | 0.788952 |
Target: 5'- cGACAuc-AUGGCC-GACGCuGcCCGCu -3' miRNA: 3'- -CUGUuauUGCCGGuCUGUGuCuGGCG- -5' |
|||||||
22372 | 5' | -51.3 | NC_005045.1 | + | 12055 | 0.67 | 0.778562 |
Target: 5'- uACGAaGAUGGCCGGAUGgAGAaaGCc -3' miRNA: 3'- cUGUUaUUGCCGGUCUGUgUCUggCG- -5' |
|||||||
22372 | 5' | -51.3 | NC_005045.1 | + | 25661 | 0.68 | 0.768006 |
Target: 5'- cACGAgauUGGaCCGGACG-AGACCGCc -3' miRNA: 3'- cUGUUauuGCC-GGUCUGUgUCUGGCG- -5' |
|||||||
22372 | 5' | -51.3 | NC_005045.1 | + | 14120 | 0.68 | 0.754054 |
Target: 5'- cGGCGGUGGCGGCggUcgcaucuucccggcGGGCACcgccauGGGCCGCu -3' miRNA: 3'- -CUGUUAUUGCCG--G--------------UCUGUG------UCUGGCG- -5' |
|||||||
22372 | 5' | -51.3 | NC_005045.1 | + | 14217 | 0.68 | 0.746444 |
Target: 5'- uGCAGaAGCGGCCcauGGCGguGcCCGCc -3' miRNA: 3'- cUGUUaUUGCCGGu--CUGUguCuGGCG- -5' |
|||||||
22372 | 5' | -51.3 | NC_005045.1 | + | 23044 | 0.68 | 0.746444 |
Target: 5'- aGCGucAGCaGGCCgcgcAGGCcCAGGCCGCg -3' miRNA: 3'- cUGUuaUUG-CCGG----UCUGuGUCUGGCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home