Results 1 - 20 of 44 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22372 | 5' | -51.3 | NC_005045.1 | + | 41301 | 0.68 | 0.724373 |
Target: 5'- cGCuGUAGCGGCCuaucaGGACGCccuGGACCuauGCa -3' miRNA: 3'- cUGuUAUUGCCGG-----UCUGUG---UCUGG---CG- -5' |
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22372 | 5' | -51.3 | NC_005045.1 | + | 41258 | 0.67 | 0.799162 |
Target: 5'- aACGAcAGCaG-CAGGCACAGGCCGg -3' miRNA: 3'- cUGUUaUUGcCgGUCUGUGUCUGGCg -5' |
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22372 | 5' | -51.3 | NC_005045.1 | + | 37989 | 0.71 | 0.587022 |
Target: 5'- aGACGAUcGGCGGCCAGAgGgCAGcGCCuggGCg -3' miRNA: 3'- -CUGUUA-UUGCCGGUCUgU-GUC-UGG---CG- -5' |
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22372 | 5' | -51.3 | NC_005045.1 | + | 37355 | 0.95 | 0.017904 |
Target: 5'- gGACAAUAACGGCCAGACcaAGACCGCc -3' miRNA: 3'- -CUGUUAUUGCCGGUCUGugUCUGGCG- -5' |
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22372 | 5' | -51.3 | NC_005045.1 | + | 35506 | 0.69 | 0.701898 |
Target: 5'- uGACGAUAuc-GCCGGugGCGG-CUGCg -3' miRNA: 3'- -CUGUUAUugcCGGUCugUGUCuGGCG- -5' |
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22372 | 5' | -51.3 | NC_005045.1 | + | 33450 | 0.69 | 0.690542 |
Target: 5'- cGAUAA-GACGGCCcaggAGGCGCcGugCGCc -3' miRNA: 3'- -CUGUUaUUGCCGG----UCUGUGuCugGCG- -5' |
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22372 | 5' | -51.3 | NC_005045.1 | + | 32573 | 0.66 | 0.855101 |
Target: 5'- gGACAGcuuACGGCCuGACaggcuguGCAGcUCGCg -3' miRNA: 3'- -CUGUUau-UGCCGGuCUG-------UGUCuGGCG- -5' |
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22372 | 5' | -51.3 | NC_005045.1 | + | 32072 | 0.67 | 0.788952 |
Target: 5'- uGGCAGUugauGCGGUUAcuuucGGCGCuGGCCGUg -3' miRNA: 3'- -CUGUUAu---UGCCGGU-----CUGUGuCUGGCG- -5' |
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22372 | 5' | -51.3 | NC_005045.1 | + | 31206 | 0.69 | 0.701898 |
Target: 5'- cGCAGUGGuucGCCgaGGACACcGACCGCg -3' miRNA: 3'- cUGUUAUUgc-CGG--UCUGUGuCUGGCG- -5' |
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22372 | 5' | -51.3 | NC_005045.1 | + | 30872 | 0.74 | 0.414505 |
Target: 5'- cGACGAgAACGGUguGGCccuGGACCGCa -3' miRNA: 3'- -CUGUUaUUGCCGguCUGug-UCUGGCG- -5' |
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22372 | 5' | -51.3 | NC_005045.1 | + | 30546 | 0.71 | 0.541615 |
Target: 5'- cGCAAgcauGCGGgucugcucaCCAgcGACACGGGCCGCg -3' miRNA: 3'- cUGUUau--UGCC---------GGU--CUGUGUCUGGCG- -5' |
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22372 | 5' | -51.3 | NC_005045.1 | + | 29981 | 0.68 | 0.746444 |
Target: 5'- gGACAAgaugcaGGCGGCCAacGGCucaagccugACGGAUCGCc -3' miRNA: 3'- -CUGUUa-----UUGCCGGU--CUG---------UGUCUGGCG- -5' |
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22372 | 5' | -51.3 | NC_005045.1 | + | 28816 | 0.66 | 0.855978 |
Target: 5'- cGACAucaGAcCGGCCAccaGCGgGGACCGUu -3' miRNA: 3'- -CUGUua-UU-GCCGGUc--UGUgUCUGGCG- -5' |
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22372 | 5' | -51.3 | NC_005045.1 | + | 27355 | 0.73 | 0.47596 |
Target: 5'- cACAcu-GCGGCCAGuCACGGcagguGCCGCc -3' miRNA: 3'- cUGUuauUGCCGGUCuGUGUC-----UGGCG- -5' |
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22372 | 5' | -51.3 | NC_005045.1 | + | 26241 | 0.69 | 0.713179 |
Target: 5'- uGGCGAUGAacaggucauCGGCCAccGugGCGGcCCGUa -3' miRNA: 3'- -CUGUUAUU---------GCCGGU--CugUGUCuGGCG- -5' |
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22372 | 5' | -51.3 | NC_005045.1 | + | 25661 | 0.68 | 0.768006 |
Target: 5'- cACGAgauUGGaCCGGACG-AGACCGCc -3' miRNA: 3'- cUGUUauuGCC-GGUCUGUgUCUGGCG- -5' |
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22372 | 5' | -51.3 | NC_005045.1 | + | 24799 | 0.66 | 0.855978 |
Target: 5'- cGACAuc-GgGGUCAGGCccucggagUAGACCGCa -3' miRNA: 3'- -CUGUuauUgCCGGUCUGu-------GUCUGGCG- -5' |
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22372 | 5' | -51.3 | NC_005045.1 | + | 24037 | 0.66 | 0.837961 |
Target: 5'- gGACAG-AGCuGCCAGG-GCAGguGCCGCa -3' miRNA: 3'- -CUGUUaUUGcCGGUCUgUGUC--UGGCG- -5' |
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22372 | 5' | -51.3 | NC_005045.1 | + | 23898 | 0.78 | 0.235406 |
Target: 5'- cGAcCGAUGGCGGCCuuGGugGCAGGguCCGCg -3' miRNA: 3'- -CU-GUUAUUGCCGG--UCugUGUCU--GGCG- -5' |
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22372 | 5' | -51.3 | NC_005045.1 | + | 23044 | 0.68 | 0.746444 |
Target: 5'- aGCGucAGCaGGCCgcgcAGGCcCAGGCCGCg -3' miRNA: 3'- cUGUuaUUG-CCGG----UCUGuGUCUGGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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