Results 1 - 20 of 44 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22372 | 5' | -51.3 | NC_005045.1 | + | 23898 | 0.78 | 0.235406 |
Target: 5'- cGAcCGAUGGCGGCCuuGGugGCAGGguCCGCg -3' miRNA: 3'- -CU-GUUAUUGCCGG--UCugUGUCU--GGCG- -5' |
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22372 | 5' | -51.3 | NC_005045.1 | + | 19599 | 0.67 | 0.816071 |
Target: 5'- gGACGAUGAagccgcuuCGGuaCCccucgggauuccggAGGCAUAGGCCGCg -3' miRNA: 3'- -CUGUUAUU--------GCC--GG--------------UCUGUGUCUGGCG- -5' |
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22372 | 5' | -51.3 | NC_005045.1 | + | 32573 | 0.66 | 0.855101 |
Target: 5'- gGACAGcuuACGGCCuGACaggcuguGCAGcUCGCg -3' miRNA: 3'- -CUGUUau-UGCCGGuCUG-------UGUCuGGCG- -5' |
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22372 | 5' | -51.3 | NC_005045.1 | + | 8791 | 0.66 | 0.863754 |
Target: 5'- cACAggAugGGCCGGcCugGGucgaaguACCGCu -3' miRNA: 3'- cUGUuaUugCCGGUCuGugUC-------UGGCG- -5' |
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22372 | 5' | -51.3 | NC_005045.1 | + | 27355 | 0.73 | 0.47596 |
Target: 5'- cACAcu-GCGGCCAGuCACGGcagguGCCGCc -3' miRNA: 3'- cUGUuauUGCCGGUCuGUGUC-----UGGCG- -5' |
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22372 | 5' | -51.3 | NC_005045.1 | + | 22144 | 0.72 | 0.485569 |
Target: 5'- gGACGAUAuccauccaGCGGCCAGuCGCAucucggcGcACCGCg -3' miRNA: 3'- -CUGUUAU--------UGCCGGUCuGUGU-------C-UGGCG- -5' |
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22372 | 5' | -51.3 | NC_005045.1 | + | 33450 | 0.69 | 0.690542 |
Target: 5'- cGAUAA-GACGGCCcaggAGGCGCcGugCGCc -3' miRNA: 3'- -CUGUUaUUGCCGG----UCUGUGuCugGCG- -5' |
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22372 | 5' | -51.3 | NC_005045.1 | + | 35506 | 0.69 | 0.701898 |
Target: 5'- uGACGAUAuc-GCCGGugGCGG-CUGCg -3' miRNA: 3'- -CUGUUAUugcCGGUCugUGUCuGGCG- -5' |
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22372 | 5' | -51.3 | NC_005045.1 | + | 2276 | 0.68 | 0.735466 |
Target: 5'- aGCAGcGGCGGCCAGguaGC-CGGcACUGCg -3' miRNA: 3'- cUGUUaUUGCCGGUC---UGuGUC-UGGCG- -5' |
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22372 | 5' | -51.3 | NC_005045.1 | + | 3115 | 0.67 | 0.80918 |
Target: 5'- uGACAgGUGACaugcCCGGACAgCGGACUGCc -3' miRNA: 3'- -CUGU-UAUUGcc--GGUCUGU-GUCUGGCG- -5' |
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22372 | 5' | -51.3 | NC_005045.1 | + | 21177 | 0.67 | 0.788952 |
Target: 5'- cACugu-GCGGUCAcGCACGGGCCGa -3' miRNA: 3'- cUGuuauUGCCGGUcUGUGUCUGGCg -5' |
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22372 | 5' | -51.3 | NC_005045.1 | + | 26241 | 0.69 | 0.713179 |
Target: 5'- uGGCGAUGAacaggucauCGGCCAccGugGCGGcCCGUa -3' miRNA: 3'- -CUGUUAUU---------GCCGGU--CugUGUCuGGCG- -5' |
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22372 | 5' | -51.3 | NC_005045.1 | + | 12560 | 0.76 | 0.332089 |
Target: 5'- uGCAGcu-CGGCCAGGCGCAucaacagcuuGGCCGCc -3' miRNA: 3'- cUGUUauuGCCGGUCUGUGU----------CUGGCG- -5' |
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22372 | 5' | -51.3 | NC_005045.1 | + | 7761 | 0.67 | 0.788952 |
Target: 5'- cGGCAGUAGCGcGCCcaAUcCAGcCCGCg -3' miRNA: 3'- -CUGUUAUUGC-CGGucUGuGUCuGGCG- -5' |
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22372 | 5' | -51.3 | NC_005045.1 | + | 9898 | 0.75 | 0.367182 |
Target: 5'- uGCAGguACGcacCCAGGCGCGGGCCGCc -3' miRNA: 3'- cUGUUauUGCc--GGUCUGUGUCUGGCG- -5' |
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22372 | 5' | -51.3 | NC_005045.1 | + | 12718 | 0.69 | 0.701898 |
Target: 5'- -----gGGCGGCUGGACgACAGACgCGUu -3' miRNA: 3'- cuguuaUUGCCGGUCUG-UGUCUG-GCG- -5' |
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22372 | 5' | -51.3 | NC_005045.1 | + | 41258 | 0.67 | 0.799162 |
Target: 5'- aACGAcAGCaG-CAGGCACAGGCCGg -3' miRNA: 3'- cUGUUaUUGcCgGUCUGUGUCUGGCg -5' |
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22372 | 5' | -51.3 | NC_005045.1 | + | 24037 | 0.66 | 0.837961 |
Target: 5'- gGACAG-AGCuGCCAGG-GCAGguGCCGCa -3' miRNA: 3'- -CUGUUaUUGcCGGUCUgUGUC--UGGCG- -5' |
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22372 | 5' | -51.3 | NC_005045.1 | + | 4548 | 0.75 | 0.367182 |
Target: 5'- cGCAGc-ACGGUgGGACGCGGACCGg -3' miRNA: 3'- cUGUUauUGCCGgUCUGUGUCUGGCg -5' |
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22372 | 5' | -51.3 | NC_005045.1 | + | 5823 | 0.7 | 0.633084 |
Target: 5'- cGCGu---CGGCCuGGCACAagcuGGCCGCu -3' miRNA: 3'- cUGUuauuGCCGGuCUGUGU----CUGGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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