Results 21 - 26 of 26 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22404 | 5' | -52 | NC_005056.1 | + | 22423 | 0.68 | 0.625188 |
Target: 5'- gACGGCAaCGGgUGCGGccuuacGGCGugGACu -3' miRNA: 3'- -UGCCGUgGCCgACGUUu-----UUGUugCUG- -5' |
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22404 | 5' | -52 | NC_005056.1 | + | 7453 | 0.68 | 0.625188 |
Target: 5'- cCGuaACCGGCacccgGCAGGGACGcccagauauuGCGACa -3' miRNA: 3'- uGCcgUGGCCGa----CGUUUUUGU----------UGCUG- -5' |
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22404 | 5' | -52 | NC_005056.1 | + | 14415 | 0.67 | 0.648799 |
Target: 5'- uGCGGCAuuuCCGGCcauucaggauuUGCAGGAuccAC-ACGGCu -3' miRNA: 3'- -UGCCGU---GGCCG-----------ACGUUUU---UGuUGCUG- -5' |
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22404 | 5' | -52 | NC_005056.1 | + | 22262 | 0.66 | 0.695706 |
Target: 5'- uGCGGCauGCUGGCauaAAGGACAAUGAa -3' miRNA: 3'- -UGCCG--UGGCCGacgUUUUUGUUGCUg -5' |
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22404 | 5' | -52 | NC_005056.1 | + | 11925 | 0.66 | 0.718788 |
Target: 5'- uACuGCACCGGCaGUGGuGAUAACGGu -3' miRNA: 3'- -UGcCGUGGCCGaCGUUuUUGUUGCUg -5' |
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22404 | 5' | -52 | NC_005056.1 | + | 7790 | 1.1 | 0.000764 |
Target: 5'- cACGGCACCGGCUGCAAAAACAACGACg -3' miRNA: 3'- -UGCCGUGGCCGACGUUUUUGUUGCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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