miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22558 3' -56 NC_005091.1 + 26236 0.66 0.716557
Target:  5'- -cGGCCUGagCGGCAGCccgaAUACGaGCg -3'
miRNA:   3'- acUUGGGCagGCCGUCGug--UAUGC-CG- -5'
22558 3' -56 NC_005091.1 + 19309 0.66 0.716557
Target:  5'- uUGAAccacuCCCGagcgCCGcGCucGCACAUGcCGGCu -3'
miRNA:   3'- -ACUU-----GGGCa---GGC-CGu-CGUGUAU-GCCG- -5'
22558 3' -56 NC_005091.1 + 9365 0.66 0.716557
Target:  5'- -cAGCCgGU-CGGCGGC-CA-GCGGCg -3'
miRNA:   3'- acUUGGgCAgGCCGUCGuGUaUGCCG- -5'
22558 3' -56 NC_005091.1 + 26151 0.66 0.716557
Target:  5'- cGAAUcgCUGUCgUGGUaucAGCGCGUgcGCGGCg -3'
miRNA:   3'- aCUUG--GGCAG-GCCG---UCGUGUA--UGCCG- -5'
22558 3' -56 NC_005091.1 + 5410 0.66 0.705931
Target:  5'- cGAuuUCCGUCaguuccugCGGCAGCGCGacCGGUu -3'
miRNA:   3'- aCUu-GGGCAG--------GCCGUCGUGUauGCCG- -5'
22558 3' -56 NC_005091.1 + 15238 0.66 0.705931
Target:  5'- cGucCCCGaUCCGG--GCGCA-ACGGCg -3'
miRNA:   3'- aCuuGGGC-AGGCCguCGUGUaUGCCG- -5'
22558 3' -56 NC_005091.1 + 12373 0.66 0.695235
Target:  5'- cGAGCgCGgccagugcgaCGGCGGCGacUACGGCc -3'
miRNA:   3'- aCUUGgGCag--------GCCGUCGUguAUGCCG- -5'
22558 3' -56 NC_005091.1 + 15931 0.66 0.695235
Target:  5'- cGuaaCCGUCUGGUucguccacuuGGCGCucGCGGCg -3'
miRNA:   3'- aCuugGGCAGGCCG----------UCGUGuaUGCCG- -5'
22558 3' -56 NC_005091.1 + 9213 0.66 0.692014
Target:  5'- -cGACCCGaaucgcgcgguguuUCCGGCGGU----GCGGCc -3'
miRNA:   3'- acUUGGGC--------------AGGCCGUCGuguaUGCCG- -5'
22558 3' -56 NC_005091.1 + 16335 0.66 0.684479
Target:  5'- cGcgUUCGUCgCGaGCGGCGCAUcgcaugccgGCGGCc -3'
miRNA:   3'- aCuuGGGCAG-GC-CGUCGUGUA---------UGCCG- -5'
22558 3' -56 NC_005091.1 + 12241 0.66 0.684479
Target:  5'- cUGAuCCCG-CC-GCAGUAC--GCGGCu -3'
miRNA:   3'- -ACUuGGGCaGGcCGUCGUGuaUGCCG- -5'
22558 3' -56 NC_005091.1 + 22148 0.66 0.684479
Target:  5'- -uGACgCGcCCGcGCAGUGCGUACaGCa -3'
miRNA:   3'- acUUGgGCaGGC-CGUCGUGUAUGcCG- -5'
22558 3' -56 NC_005091.1 + 56088 0.66 0.683401
Target:  5'- gGAGgUCGgCCGGC-GCGCAUGauuacuuCGGCa -3'
miRNA:   3'- aCUUgGGCaGGCCGuCGUGUAU-------GCCG- -5'
22558 3' -56 NC_005091.1 + 26338 0.66 0.673674
Target:  5'- cGcGCCCGgCCgcuacgauGGCAGCcCcgGCGGCc -3'
miRNA:   3'- aCuUGGGCaGG--------CCGUCGuGuaUGCCG- -5'
22558 3' -56 NC_005091.1 + 57265 0.66 0.673674
Target:  5'- cGcAACCCGgcgUCGGCAGgAgGaccACGGCa -3'
miRNA:   3'- aC-UUGGGCa--GGCCGUCgUgUa--UGCCG- -5'
22558 3' -56 NC_005091.1 + 26700 0.66 0.672591
Target:  5'- gUGAACUCGacaagcuugcugcUgCGGCGGC-CGgcgGCGGCc -3'
miRNA:   3'- -ACUUGGGC-------------AgGCCGUCGuGUa--UGCCG- -5'
22558 3' -56 NC_005091.1 + 2463 0.66 0.672591
Target:  5'- aUGAGCaaggCGUUCGGCuacgggaAGCucggaGUGCGGCa -3'
miRNA:   3'- -ACUUGg---GCAGGCCG-------UCGug---UAUGCCG- -5'
22558 3' -56 NC_005091.1 + 11103 0.66 0.662831
Target:  5'- gGAAgCCGcCCGGCAaaGCGacccCGGCg -3'
miRNA:   3'- aCUUgGGCaGGCCGU--CGUguauGCCG- -5'
22558 3' -56 NC_005091.1 + 52687 0.67 0.651959
Target:  5'- cGGGCgCGcacgCCGGcCAGUGCG-ACGGCu -3'
miRNA:   3'- aCUUGgGCa---GGCC-GUCGUGUaUGCCG- -5'
22558 3' -56 NC_005091.1 + 7351 0.67 0.64107
Target:  5'- cGAACuuGUCCaguacGCGGCugAcacCGGCa -3'
miRNA:   3'- aCUUGggCAGGc----CGUCGugUau-GCCG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.