Results 1 - 20 of 70 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22558 | 3' | -56 | NC_005091.1 | + | 19309 | 0.66 | 0.716557 |
Target: 5'- uUGAAccacuCCCGagcgCCGcGCucGCACAUGcCGGCu -3' miRNA: 3'- -ACUU-----GGGCa---GGC-CGu-CGUGUAU-GCCG- -5' |
|||||||
22558 | 3' | -56 | NC_005091.1 | + | 26236 | 0.66 | 0.716557 |
Target: 5'- -cGGCCUGagCGGCAGCccgaAUACGaGCg -3' miRNA: 3'- acUUGGGCagGCCGUCGug--UAUGC-CG- -5' |
|||||||
22558 | 3' | -56 | NC_005091.1 | + | 9365 | 0.66 | 0.716557 |
Target: 5'- -cAGCCgGU-CGGCGGC-CA-GCGGCg -3' miRNA: 3'- acUUGGgCAgGCCGUCGuGUaUGCCG- -5' |
|||||||
22558 | 3' | -56 | NC_005091.1 | + | 26151 | 0.66 | 0.716557 |
Target: 5'- cGAAUcgCUGUCgUGGUaucAGCGCGUgcGCGGCg -3' miRNA: 3'- aCUUG--GGCAG-GCCG---UCGUGUA--UGCCG- -5' |
|||||||
22558 | 3' | -56 | NC_005091.1 | + | 5410 | 0.66 | 0.705931 |
Target: 5'- cGAuuUCCGUCaguuccugCGGCAGCGCGacCGGUu -3' miRNA: 3'- aCUu-GGGCAG--------GCCGUCGUGUauGCCG- -5' |
|||||||
22558 | 3' | -56 | NC_005091.1 | + | 15238 | 0.66 | 0.705931 |
Target: 5'- cGucCCCGaUCCGG--GCGCA-ACGGCg -3' miRNA: 3'- aCuuGGGC-AGGCCguCGUGUaUGCCG- -5' |
|||||||
22558 | 3' | -56 | NC_005091.1 | + | 12373 | 0.66 | 0.695235 |
Target: 5'- cGAGCgCGgccagugcgaCGGCGGCGacUACGGCc -3' miRNA: 3'- aCUUGgGCag--------GCCGUCGUguAUGCCG- -5' |
|||||||
22558 | 3' | -56 | NC_005091.1 | + | 15931 | 0.66 | 0.695235 |
Target: 5'- cGuaaCCGUCUGGUucguccacuuGGCGCucGCGGCg -3' miRNA: 3'- aCuugGGCAGGCCG----------UCGUGuaUGCCG- -5' |
|||||||
22558 | 3' | -56 | NC_005091.1 | + | 9213 | 0.66 | 0.692014 |
Target: 5'- -cGACCCGaaucgcgcgguguuUCCGGCGGU----GCGGCc -3' miRNA: 3'- acUUGGGC--------------AGGCCGUCGuguaUGCCG- -5' |
|||||||
22558 | 3' | -56 | NC_005091.1 | + | 22148 | 0.66 | 0.684479 |
Target: 5'- -uGACgCGcCCGcGCAGUGCGUACaGCa -3' miRNA: 3'- acUUGgGCaGGC-CGUCGUGUAUGcCG- -5' |
|||||||
22558 | 3' | -56 | NC_005091.1 | + | 16335 | 0.66 | 0.684479 |
Target: 5'- cGcgUUCGUCgCGaGCGGCGCAUcgcaugccgGCGGCc -3' miRNA: 3'- aCuuGGGCAG-GC-CGUCGUGUA---------UGCCG- -5' |
|||||||
22558 | 3' | -56 | NC_005091.1 | + | 12241 | 0.66 | 0.684479 |
Target: 5'- cUGAuCCCG-CC-GCAGUAC--GCGGCu -3' miRNA: 3'- -ACUuGGGCaGGcCGUCGUGuaUGCCG- -5' |
|||||||
22558 | 3' | -56 | NC_005091.1 | + | 56088 | 0.66 | 0.683401 |
Target: 5'- gGAGgUCGgCCGGC-GCGCAUGauuacuuCGGCa -3' miRNA: 3'- aCUUgGGCaGGCCGuCGUGUAU-------GCCG- -5' |
|||||||
22558 | 3' | -56 | NC_005091.1 | + | 26338 | 0.66 | 0.673674 |
Target: 5'- cGcGCCCGgCCgcuacgauGGCAGCcCcgGCGGCc -3' miRNA: 3'- aCuUGGGCaGG--------CCGUCGuGuaUGCCG- -5' |
|||||||
22558 | 3' | -56 | NC_005091.1 | + | 57265 | 0.66 | 0.673674 |
Target: 5'- cGcAACCCGgcgUCGGCAGgAgGaccACGGCa -3' miRNA: 3'- aC-UUGGGCa--GGCCGUCgUgUa--UGCCG- -5' |
|||||||
22558 | 3' | -56 | NC_005091.1 | + | 26700 | 0.66 | 0.672591 |
Target: 5'- gUGAACUCGacaagcuugcugcUgCGGCGGC-CGgcgGCGGCc -3' miRNA: 3'- -ACUUGGGC-------------AgGCCGUCGuGUa--UGCCG- -5' |
|||||||
22558 | 3' | -56 | NC_005091.1 | + | 2463 | 0.66 | 0.672591 |
Target: 5'- aUGAGCaaggCGUUCGGCuacgggaAGCucggaGUGCGGCa -3' miRNA: 3'- -ACUUGg---GCAGGCCG-------UCGug---UAUGCCG- -5' |
|||||||
22558 | 3' | -56 | NC_005091.1 | + | 11103 | 0.66 | 0.662831 |
Target: 5'- gGAAgCCGcCCGGCAaaGCGacccCGGCg -3' miRNA: 3'- aCUUgGGCaGGCCGU--CGUguauGCCG- -5' |
|||||||
22558 | 3' | -56 | NC_005091.1 | + | 52687 | 0.67 | 0.651959 |
Target: 5'- cGGGCgCGcacgCCGGcCAGUGCG-ACGGCu -3' miRNA: 3'- aCUUGgGCa---GGCC-GUCGUGUaUGCCG- -5' |
|||||||
22558 | 3' | -56 | NC_005091.1 | + | 7351 | 0.67 | 0.64107 |
Target: 5'- cGAACuuGUCCaguacGCGGCugAcacCGGCa -3' miRNA: 3'- aCUUGggCAGGc----CGUCGugUau-GCCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home