miRNA display CGI


Results 1 - 20 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22558 5' -62.6 NC_005091.1 + 16018 0.66 0.391191
Target:  5'- aGGCCGacaagcgucgUGCUGCCGCcgGCCG-GCgGCa -3'
miRNA:   3'- aCUGGCa---------ACGGCGGCG--CGGCuCG-CGc -5'
22558 5' -62.6 NC_005091.1 + 43763 0.66 0.391191
Target:  5'- gGAauCCGUaaauccaGUCGUacucguagagCGCGCCGAGCGCa -3'
miRNA:   3'- aCU--GGCAa------CGGCG----------GCGCGGCUCGCGc -5'
22558 5' -62.6 NC_005091.1 + 33151 0.66 0.382696
Target:  5'- gGACCuucaugaaGUCGUCGUGuUCGAGCGCGu -3'
miRNA:   3'- aCUGGcaa-----CGGCGGCGC-GGCUCGCGC- -5'
22558 5' -62.6 NC_005091.1 + 49033 0.66 0.382696
Target:  5'- cGugCGgUGCUGCgggCGCGCUGcuGCGCa -3'
miRNA:   3'- aCugGCaACGGCG---GCGCGGCu-CGCGc -5'
22558 5' -62.6 NC_005091.1 + 25829 0.66 0.382696
Target:  5'- gUGGCCGagaCCGcCCGUGUacugcacaUGAGCGCGg -3'
miRNA:   3'- -ACUGGCaacGGC-GGCGCG--------GCUCGCGC- -5'
22558 5' -62.6 NC_005091.1 + 14512 0.66 0.366077
Target:  5'- -cGCCGguaagcgUGCCGCuCGaUGCCGGG-GCGa -3'
miRNA:   3'- acUGGCa------ACGGCG-GC-GCGGCUCgCGC- -5'
22558 5' -62.6 NC_005091.1 + 57353 0.66 0.366077
Target:  5'- -uGCCGUgguccucCUGCCGaCGCCGGGuUGCGg -3'
miRNA:   3'- acUGGCAac-----GGCGGC-GCGGCUC-GCGC- -5'
22558 5' -62.6 NC_005091.1 + 54296 0.66 0.365259
Target:  5'- aUGGCCGcaGuaGCCGCacuuaaccgcaugGUCGAGCGCu -3'
miRNA:   3'- -ACUGGCaaCggCGGCG-------------CGGCUCGCGc -5'
22558 5' -62.6 NC_005091.1 + 45313 0.66 0.357956
Target:  5'- cGGCCGguagaCGaCagaGCGCCGAGCGUa -3'
miRNA:   3'- aCUGGCaacg-GC-Gg--CGCGGCUCGCGc -5'
22558 5' -62.6 NC_005091.1 + 53111 0.66 0.357956
Target:  5'- uUGAUCcg-GCUGCCGCGCUGGGUc-- -3'
miRNA:   3'- -ACUGGcaaCGGCGGCGCGGCUCGcgc -5'
22558 5' -62.6 NC_005091.1 + 44749 0.66 0.357956
Target:  5'- -uGCC-UUGCCGCCGCccuuGCCGGcCGCc -3'
miRNA:   3'- acUGGcAACGGCGGCG----CGGCUcGCGc -5'
22558 5' -62.6 NC_005091.1 + 49824 0.66 0.349963
Target:  5'- cGuuCGUgGCgGCuugCGCGuuGAGCGCGg -3'
miRNA:   3'- aCugGCAaCGgCG---GCGCggCUCGCGC- -5'
22558 5' -62.6 NC_005091.1 + 26601 0.66 0.349963
Target:  5'- cGGCCGccgccgGCCGCCGCagcagcaagcuuGUCGAGUucacggGCGg -3'
miRNA:   3'- aCUGGCaa----CGGCGGCG------------CGGCUCG------CGC- -5'
22558 5' -62.6 NC_005091.1 + 25219 0.67 0.345228
Target:  5'- cGuCCGgggcgGCCGCUGCaccggggucgaugcaGCCG-GCGCGu -3'
miRNA:   3'- aCuGGCaa---CGGCGGCG---------------CGGCuCGCGC- -5'
22558 5' -62.6 NC_005091.1 + 5292 0.67 0.342097
Target:  5'- cGGCCGUUGCaCuCCuuGCaCCGuGCGCGa -3'
miRNA:   3'- aCUGGCAACG-GcGG--CGcGGCuCGCGC- -5'
22558 5' -62.6 NC_005091.1 + 6446 0.67 0.342097
Target:  5'- gGGCagcgUGCgCGCUGCGCUGAaggaagcagGCGCGa -3'
miRNA:   3'- aCUGgca-ACG-GCGGCGCGGCU---------CGCGC- -5'
22558 5' -62.6 NC_005091.1 + 23941 0.67 0.342097
Target:  5'- aGACCGcccuucCCGCCGCagauGCCGGGCcaGUGg -3'
miRNA:   3'- aCUGGCaac---GGCGGCG----CGGCUCG--CGC- -5'
22558 5' -62.6 NC_005091.1 + 714 0.67 0.342097
Target:  5'- aUGuCCGg-GCUGCUGCGUgagguCGAGCGCc -3'
miRNA:   3'- -ACuGGCaaCGGCGGCGCG-----GCUCGCGc -5'
22558 5' -62.6 NC_005091.1 + 36413 0.67 0.342097
Target:  5'- cGAUCcg-GCCGCCGCaGCaCG-GCGCu -3'
miRNA:   3'- aCUGGcaaCGGCGGCG-CG-GCuCGCGc -5'
22558 5' -62.6 NC_005091.1 + 6619 0.67 0.334359
Target:  5'- cGuCCGggcUGCCGgCGUucauGcCCGAGCGCGc -3'
miRNA:   3'- aCuGGCa--ACGGCgGCG----C-GGCUCGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.