miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22564 3' -54.3 NC_005091.1 + 19405 0.66 0.781683
Target:  5'- aAGCcgGCAUGugcgaGCGCGGCGCu--CGGg -3'
miRNA:   3'- -UUGa-CGUACug---UGCGUCGCGcauGCC- -5'
22564 3' -54.3 NC_005091.1 + 51628 0.66 0.771565
Target:  5'- ---cGCAUGGC-CGCGuaucagauacuGCGCGgggGCGGu -3'
miRNA:   3'- uugaCGUACUGuGCGU-----------CGCGCa--UGCC- -5'
22564 3' -54.3 NC_005091.1 + 49439 0.66 0.771565
Target:  5'- uGACUGCAuccuuagacguUGaACACGUAGCGC--ACGa -3'
miRNA:   3'- -UUGACGU-----------AC-UGUGCGUCGCGcaUGCc -5'
22564 3' -54.3 NC_005091.1 + 35571 0.66 0.767476
Target:  5'- uGGCUGCcUGACagcuacuACGUccagcucgucuccgAGCgGCGUACGGa -3'
miRNA:   3'- -UUGACGuACUG-------UGCG--------------UCG-CGCAUGCC- -5'
22564 3' -54.3 NC_005091.1 + 35084 0.66 0.7613
Target:  5'- --aUGCgGUGAC-UGCGGCcCGUGCGGc -3'
miRNA:   3'- uugACG-UACUGuGCGUCGcGCAUGCC- -5'
22564 3' -54.3 NC_005091.1 + 25046 0.66 0.7613
Target:  5'- aGACUGCGaGACugGuCGGCacuGCG-GCGGc -3'
miRNA:   3'- -UUGACGUaCUGugC-GUCG---CGCaUGCC- -5'
22564 3' -54.3 NC_005091.1 + 29960 0.66 0.7509
Target:  5'- cACUcgGCAUcACAuUGCAGCGCG-ACGGc -3'
miRNA:   3'- uUGA--CGUAcUGU-GCGUCGCGCaUGCC- -5'
22564 3' -54.3 NC_005091.1 + 11332 0.66 0.740376
Target:  5'- cGGCUGCcgcguucGACuGCGCAuGUGCGUcACGGa -3'
miRNA:   3'- -UUGACGua-----CUG-UGCGU-CGCGCA-UGCC- -5'
22564 3' -54.3 NC_005091.1 + 766 0.67 0.729741
Target:  5'- cACUGCGgauuCGCGCGGCGCaGUccGCGu -3'
miRNA:   3'- uUGACGUacu-GUGCGUCGCG-CA--UGCc -5'
22564 3' -54.3 NC_005091.1 + 11 0.67 0.719006
Target:  5'- gAAUUGCGcGGuCAUGCAGCGCaUGCGc -3'
miRNA:   3'- -UUGACGUaCU-GUGCGUCGCGcAUGCc -5'
22564 3' -54.3 NC_005091.1 + 57405 0.67 0.719006
Target:  5'- gAAUUGCGcGGuCAUGCAGCGCaUGCGc -3'
miRNA:   3'- -UUGACGUaCU-GUGCGUCGCGcAUGCc -5'
22564 3' -54.3 NC_005091.1 + 49722 0.67 0.708184
Target:  5'- -uCUGCAUGcgggGCACGuCGGC-CGUGCGu -3'
miRNA:   3'- uuGACGUAC----UGUGC-GUCGcGCAUGCc -5'
22564 3' -54.3 NC_005091.1 + 26146 0.67 0.708184
Target:  5'- cGCUGuCGUGGUAU-CAGCGCGUGCGcGg -3'
miRNA:   3'- uUGAC-GUACUGUGcGUCGCGCAUGC-C- -5'
22564 3' -54.3 NC_005091.1 + 19128 0.67 0.708184
Target:  5'- uACUGCGUgGGCGgGCAGCGUcucgacuaGCGGu -3'
miRNA:   3'- uUGACGUA-CUGUgCGUCGCGca------UGCC- -5'
22564 3' -54.3 NC_005091.1 + 52115 0.67 0.708184
Target:  5'- aGGCgGCcgucgccGGCGCGgGGCGCGUuGCGGa -3'
miRNA:   3'- -UUGaCGua-----CUGUGCgUCGCGCA-UGCC- -5'
22564 3' -54.3 NC_005091.1 + 40016 0.67 0.686322
Target:  5'- gGAgUGCAUGAC-CGCgaAGCGCaagugGUACGa -3'
miRNA:   3'- -UUgACGUACUGuGCG--UCGCG-----CAUGCc -5'
22564 3' -54.3 NC_005091.1 + 39681 0.67 0.686322
Target:  5'- --aUGCGUcGACACG--GCGCGUACGu -3'
miRNA:   3'- uugACGUA-CUGUGCguCGCGCAUGCc -5'
22564 3' -54.3 NC_005091.1 + 9635 0.67 0.675306
Target:  5'- uGGCUGCc-GACACgGCAGCcucgucacGgGUGCGGg -3'
miRNA:   3'- -UUGACGuaCUGUG-CGUCG--------CgCAUGCC- -5'
22564 3' -54.3 NC_005091.1 + 51587 0.67 0.675306
Target:  5'- ---cGCGUGACggGCGCgcagaAGCGCGgcACGGg -3'
miRNA:   3'- uugaCGUACUG--UGCG-----UCGCGCa-UGCC- -5'
22564 3' -54.3 NC_005091.1 + 41730 0.67 0.675306
Target:  5'- aAACUgGCGcuGCACGaUGGCGCGUGCGu -3'
miRNA:   3'- -UUGA-CGUacUGUGC-GUCGCGCAUGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.