Results 21 - 40 of 69 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22569 | 3' | -55.5 | NC_005091.1 | + | 44591 | 0.7 | 0.48207 |
Target: 5'- uCGUACGugGCGUcgAAGuguucCGGCUUGAUCg -3' miRNA: 3'- -GCAUGCugUGCG--UUCc----GCCGAGCUGG- -5' |
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22569 | 3' | -55.5 | NC_005091.1 | + | 44134 | 0.66 | 0.746382 |
Target: 5'- aGUACGuCGCGCAgucugucgaauGGGCGcagucGCUucccggCGACCu -3' miRNA: 3'- gCAUGCuGUGCGU-----------UCCGC-----CGA------GCUGG- -5' |
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22569 | 3' | -55.5 | NC_005091.1 | + | 43116 | 0.69 | 0.554354 |
Target: 5'- --cGCGACGaGCGGGGCGauaauuuuCUCGGCCg -3' miRNA: 3'- gcaUGCUGUgCGUUCCGCc-------GAGCUGG- -5' |
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22569 | 3' | -55.5 | NC_005091.1 | + | 40643 | 0.72 | 0.396481 |
Target: 5'- cCGUGCucGGCGCGgGAuaccgacucGGCGGCggCGACCu -3' miRNA: 3'- -GCAUG--CUGUGCgUU---------CCGCCGa-GCUGG- -5' |
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22569 | 3' | -55.5 | NC_005091.1 | + | 39335 | 0.76 | 0.238436 |
Target: 5'- gCGUaGCGACACGCA--GCGGCgCGAUCa -3' miRNA: 3'- -GCA-UGCUGUGCGUucCGCCGaGCUGG- -5' |
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22569 | 3' | -55.5 | NC_005091.1 | + | 38647 | 0.69 | 0.56497 |
Target: 5'- --gAUGGCGCGCuucaacAGGaGCGGCuuaUCGACCu -3' miRNA: 3'- gcaUGCUGUGCG------UUC-CGCCG---AGCUGG- -5' |
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22569 | 3' | -55.5 | NC_005091.1 | + | 38403 | 0.67 | 0.704691 |
Target: 5'- aGUACGcUACGagcaGCGGCUCG-CCg -3' miRNA: 3'- gCAUGCuGUGCguucCGCCGAGCuGG- -5' |
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22569 | 3' | -55.5 | NC_005091.1 | + | 35214 | 0.67 | 0.714192 |
Target: 5'- --cGCGACGCGUaccacaagcugcuGAccGGCcGCUCGGCCc -3' miRNA: 3'- gcaUGCUGUGCG-------------UU--CCGcCGAGCUGG- -5' |
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22569 | 3' | -55.5 | NC_005091.1 | + | 34513 | 0.72 | 0.414657 |
Target: 5'- aCGUAgcCGAcCACGcCAAGGCGGaUCaGACCg -3' miRNA: 3'- -GCAU--GCU-GUGC-GUUCCGCCgAG-CUGG- -5' |
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22569 | 3' | -55.5 | NC_005091.1 | + | 34432 | 0.71 | 0.472105 |
Target: 5'- gCGUGCagUACGaCAAGcGCGGC-CGGCCg -3' miRNA: 3'- -GCAUGcuGUGC-GUUC-CGCCGaGCUGG- -5' |
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22569 | 3' | -55.5 | NC_005091.1 | + | 34099 | 0.66 | 0.7361 |
Target: 5'- gCGUACGACGCGUugauGaCGGCguuuugaagCGACa -3' miRNA: 3'- -GCAUGCUGUGCGuu--CcGCCGa--------GCUGg -5' |
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22569 | 3' | -55.5 | NC_005091.1 | + | 32301 | 0.69 | 0.56497 |
Target: 5'- cCGUugACGACGCG-AAGGUGauGCUCGcuGCCg -3' miRNA: 3'- -GCA--UGCUGUGCgUUCCGC--CGAGC--UGG- -5' |
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22569 | 3' | -55.5 | NC_005091.1 | + | 31874 | 0.66 | 0.756553 |
Target: 5'- cCGUGuCGuCGCGCucgucGGCGGCcugcUCGugCc -3' miRNA: 3'- -GCAU-GCuGUGCGuu---CCGCCG----AGCugG- -5' |
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22569 | 3' | -55.5 | NC_005091.1 | + | 31804 | 0.76 | 0.250894 |
Target: 5'- gCGUACGGCauuucgGCGCAgccgaAGGCGGC-CGGCg -3' miRNA: 3'- -GCAUGCUG------UGCGU-----UCCGCCGaGCUGg -5' |
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22569 | 3' | -55.5 | NC_005091.1 | + | 30086 | 0.66 | 0.725717 |
Target: 5'- --gACGGaccaGCGCuuuaAGGGCGGCgaagucgcCGACCa -3' miRNA: 3'- gcaUGCUg---UGCG----UUCCGCCGa-------GCUGG- -5' |
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22569 | 3' | -55.5 | NC_005091.1 | + | 29511 | 0.71 | 0.472105 |
Target: 5'- ---uCGACGCGCAAgGGCGGCgucUCGGUCg -3' miRNA: 3'- gcauGCUGUGCGUU-CCGCCG---AGCUGG- -5' |
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22569 | 3' | -55.5 | NC_005091.1 | + | 28268 | 0.79 | 0.160761 |
Target: 5'- --gGCGACGCGCu-GGCGGCUugcgUGACCu -3' miRNA: 3'- gcaUGCUGUGCGuuCCGCCGA----GCUGG- -5' |
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22569 | 3' | -55.5 | NC_005091.1 | + | 25745 | 0.68 | 0.607884 |
Target: 5'- uGUGCaGuACACG---GGCGGuCUCGGCCa -3' miRNA: 3'- gCAUG-C-UGUGCguuCCGCC-GAGCUGG- -5' |
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22569 | 3' | -55.5 | NC_005091.1 | + | 24882 | 0.69 | 0.543797 |
Target: 5'- --gGCGGCcuGCGCAGcacGGCGGaauucCUCGGCCu -3' miRNA: 3'- gcaUGCUG--UGCGUU---CCGCC-----GAGCUGG- -5' |
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22569 | 3' | -55.5 | NC_005091.1 | + | 24726 | 0.7 | 0.502299 |
Target: 5'- uGgcCGACAa-CAAGGCGGCguUCGACg -3' miRNA: 3'- gCauGCUGUgcGUUCCGCCG--AGCUGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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