Results 21 - 40 of 69 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22569 | 3' | -55.5 | NC_005091.1 | + | 20381 | 0.69 | 0.559655 |
Target: 5'- aCGUACGuugcgacgaacauCGCGCAcGGCGGCUacucgcaaagcggCGACg -3' miRNA: 3'- -GCAUGCu------------GUGCGUuCCGCCGA-------------GCUGg -5' |
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22569 | 3' | -55.5 | NC_005091.1 | + | 16564 | 0.68 | 0.640308 |
Target: 5'- aGUACG-CGCGgAAGaauucCGGCUgGGCCg -3' miRNA: 3'- gCAUGCuGUGCgUUCc----GCCGAgCUGG- -5' |
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22569 | 3' | -55.5 | NC_005091.1 | + | 9057 | 0.68 | 0.651114 |
Target: 5'- uGUACGACGCGCucgccGGGaaGUaaCGGCCg -3' miRNA: 3'- gCAUGCUGUGCGu----UCCgcCGa-GCUGG- -5' |
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22569 | 3' | -55.5 | NC_005091.1 | + | 40643 | 0.72 | 0.396481 |
Target: 5'- cCGUGCucGGCGCGgGAuaccgacucGGCGGCggCGACCu -3' miRNA: 3'- -GCAUG--CUGUGCgUU---------CCGCCGa-GCUGG- -5' |
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22569 | 3' | -55.5 | NC_005091.1 | + | 24726 | 0.7 | 0.502299 |
Target: 5'- uGgcCGACAa-CAAGGCGGCguUCGACg -3' miRNA: 3'- gCauGCUGUgcGUUCCGCCG--AGCUGg -5' |
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22569 | 3' | -55.5 | NC_005091.1 | + | 23500 | 0.69 | 0.597104 |
Target: 5'- --gGCGACGCGCGcGGCGauggcgcuGCUCGGuCUg -3' miRNA: 3'- gcaUGCUGUGCGUuCCGC--------CGAGCU-GG- -5' |
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22569 | 3' | -55.5 | NC_005091.1 | + | 51550 | 0.67 | 0.661904 |
Target: 5'- cCGcGCGGCAuCGCcaaguGGGCGGaagcgaCGACCg -3' miRNA: 3'- -GCaUGCUGU-GCGu----UCCGCCga----GCUGG- -5' |
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22569 | 3' | -55.5 | NC_005091.1 | + | 12567 | 0.7 | 0.512552 |
Target: 5'- -uUGCGACGCauCGAGGacaaGCUCGACCg -3' miRNA: 3'- gcAUGCUGUGc-GUUCCgc--CGAGCUGG- -5' |
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22569 | 3' | -55.5 | NC_005091.1 | + | 24627 | 0.67 | 0.661904 |
Target: 5'- ---cCGAUACGUccGGCGGCUUGuACg -3' miRNA: 3'- gcauGCUGUGCGuuCCGCCGAGC-UGg -5' |
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22569 | 3' | -55.5 | NC_005091.1 | + | 32301 | 0.69 | 0.56497 |
Target: 5'- cCGUugACGACGCG-AAGGUGauGCUCGcuGCCg -3' miRNA: 3'- -GCA--UGCUGUGCgUUCCGC--CGAGC--UGG- -5' |
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22569 | 3' | -55.5 | NC_005091.1 | + | 24882 | 0.69 | 0.543797 |
Target: 5'- --gGCGGCcuGCGCAGcacGGCGGaauucCUCGGCCu -3' miRNA: 3'- gcaUGCUG--UGCGUU---CCGCC-----GAGCUGG- -5' |
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22569 | 3' | -55.5 | NC_005091.1 | + | 14086 | 0.67 | 0.682321 |
Target: 5'- -aUAUGugGCGCGcgaucuccggaacGGGCGGUgCGACg -3' miRNA: 3'- gcAUGCugUGCGU-------------UCCGCCGaGCUGg -5' |
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22569 | 3' | -55.5 | NC_005091.1 | + | 21869 | 0.68 | 0.618684 |
Target: 5'- ---cCGACACGaAGGGCGucaGCUCGGCa -3' miRNA: 3'- gcauGCUGUGCgUUCCGC---CGAGCUGg -5' |
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22569 | 3' | -55.5 | NC_005091.1 | + | 55210 | 0.68 | 0.629495 |
Target: 5'- --cGCGGCccguGCGCGGGGgucCGGCUCGGuucCCg -3' miRNA: 3'- gcaUGCUG----UGCGUUCC---GCCGAGCU---GG- -5' |
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22569 | 3' | -55.5 | NC_005091.1 | + | 22142 | 0.68 | 0.640308 |
Target: 5'- -aUACGACgaucaccaucaaGCGCA--GCGGCUUGGCUg -3' miRNA: 3'- gcAUGCUG------------UGCGUucCGCCGAGCUGG- -5' |
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22569 | 3' | -55.5 | NC_005091.1 | + | 13067 | 0.68 | 0.651114 |
Target: 5'- --gGCGGCAgGCAAuacGCcGCUCGGCCc -3' miRNA: 3'- gcaUGCUGUgCGUUc--CGcCGAGCUGG- -5' |
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22569 | 3' | -55.5 | NC_005091.1 | + | 31804 | 0.76 | 0.250894 |
Target: 5'- gCGUACGGCauuucgGCGCAgccgaAGGCGGC-CGGCg -3' miRNA: 3'- -GCAUGCUG------UGCGU-----UCCGCCGaGCUGg -5' |
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22569 | 3' | -55.5 | NC_005091.1 | + | 44655 | 0.71 | 0.433335 |
Target: 5'- aCGUACGACGCgGCcgagAAGGCG-CUCGAa- -3' miRNA: 3'- -GCAUGCUGUG-CG----UUCCGCcGAGCUgg -5' |
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22569 | 3' | -55.5 | NC_005091.1 | + | 29511 | 0.71 | 0.472105 |
Target: 5'- ---uCGACGCGCAAgGGCGGCgucUCGGUCg -3' miRNA: 3'- gcauGCUGUGCGUU-CCGCCG---AGCUGG- -5' |
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22569 | 3' | -55.5 | NC_005091.1 | + | 9869 | 0.69 | 0.597104 |
Target: 5'- cCGUACGugACGaucauccuCGAcGGCGGCUacACCg -3' miRNA: 3'- -GCAUGCugUGC--------GUU-CCGCCGAgcUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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