miRNA display CGI


Results 1 - 20 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22574 5' -60.1 NC_005091.1 + 16659 0.66 0.526198
Target:  5'- -gCCCGUgGAGCCGCugaaagcggucCACCCGa-GCu -3'
miRNA:   3'- caGGGCGgCUUGGCGu----------GUGGGCagCG- -5'
22574 5' -60.1 NC_005091.1 + 40858 0.66 0.526198
Target:  5'- -cCCCGCuCGGauggcguucgugACCGUgcagaGCGCCCaGUCGUu -3'
miRNA:   3'- caGGGCG-GCU------------UGGCG-----UGUGGG-CAGCG- -5'
22574 5' -60.1 NC_005091.1 + 15046 0.66 0.526198
Target:  5'- cUCCCGCCuguCauggGCGCAUCCGgugguUCGCa -3'
miRNA:   3'- cAGGGCGGcuuGg---CGUGUGGGC-----AGCG- -5'
22574 5' -60.1 NC_005091.1 + 14926 0.66 0.526198
Target:  5'- cUCCCGCCuguCauggGCGCAUCCGgugguUCGCa -3'
miRNA:   3'- cAGGGCGGcuuGg---CGUGUGGGC-----AGCG- -5'
22574 5' -60.1 NC_005091.1 + 15166 0.66 0.526198
Target:  5'- cUCCCGCCuguCauggGCGCAUCCGgugguUCGCa -3'
miRNA:   3'- cAGGGCGGcuuGg---CGUGUGGGC-----AGCG- -5'
22574 5' -60.1 NC_005091.1 + 40872 0.66 0.526198
Target:  5'- gGUCUCGCCGGAUgCGUGCGCag--CGCg -3'
miRNA:   3'- -CAGGGCGGCUUG-GCGUGUGggcaGCG- -5'
22574 5' -60.1 NC_005091.1 + 22765 0.66 0.526198
Target:  5'- -aCCCGCUGAcggccuCUGCGCAggucggagauaCCGUCGUg -3'
miRNA:   3'- caGGGCGGCUu-----GGCGUGUg----------GGCAGCG- -5'
22574 5' -60.1 NC_005091.1 + 13503 0.66 0.520139
Target:  5'- --gCCGCCGAGaCCGUucacgucgcugcucgACGCCgGgUCGCu -3'
miRNA:   3'- cagGGCGGCUU-GGCG---------------UGUGGgC-AGCG- -5'
22574 5' -60.1 NC_005091.1 + 51043 0.66 0.516116
Target:  5'- -gCuuGCCGAuuugcCCGUGCGCaCCG-CGCu -3'
miRNA:   3'- caGggCGGCUu----GGCGUGUG-GGCaGCG- -5'
22574 5' -60.1 NC_005091.1 + 56362 0.66 0.516116
Target:  5'- cGUCCCGCCaGaAGCCcCAUACgCCaGcCGCa -3'
miRNA:   3'- -CAGGGCGG-C-UUGGcGUGUG-GG-CaGCG- -5'
22574 5' -60.1 NC_005091.1 + 20399 0.66 0.516116
Target:  5'- aUCCCGUgGAACaacaGUACGuaCGUUGCg -3'
miRNA:   3'- cAGGGCGgCUUGg---CGUGUggGCAGCG- -5'
22574 5' -60.1 NC_005091.1 + 40620 0.66 0.506112
Target:  5'- cUUCCGgguacUCGAcGCCGUACAgCCgCGUCGCg -3'
miRNA:   3'- cAGGGC-----GGCU-UGGCGUGU-GG-GCAGCG- -5'
22574 5' -60.1 NC_005091.1 + 31318 0.66 0.506112
Target:  5'- aUCaacCCGAACCGUACGCUcaagCGUCGUg -3'
miRNA:   3'- cAGggcGGCUUGGCGUGUGG----GCAGCG- -5'
22574 5' -60.1 NC_005091.1 + 7476 0.66 0.506112
Target:  5'- -aCCaaGCCGAGgCGCACcagACCaGUCGCu -3'
miRNA:   3'- caGGg-CGGCUUgGCGUG---UGGgCAGCG- -5'
22574 5' -60.1 NC_005091.1 + 12978 0.66 0.496193
Target:  5'- cGUCCgGgCCGAGCgGCGuauUGCCUGcCGCc -3'
miRNA:   3'- -CAGGgC-GGCUUGgCGU---GUGGGCaGCG- -5'
22574 5' -60.1 NC_005091.1 + 9299 0.66 0.496193
Target:  5'- --aCCGCCGGaaacACCGCGCgAUUCGggUCGCc -3'
miRNA:   3'- cagGGCGGCU----UGGCGUG-UGGGC--AGCG- -5'
22574 5' -60.1 NC_005091.1 + 12590 0.66 0.496193
Target:  5'- --gUgGCCGAuUCGCGCGCCCGgucucggaugUCGCc -3'
miRNA:   3'- cagGgCGGCUuGGCGUGUGGGC----------AGCG- -5'
22574 5' -60.1 NC_005091.1 + 37137 0.66 0.49225
Target:  5'- gGUCUCGuuGAACCaaucgcccacguaCGCGCCCGgCGUg -3'
miRNA:   3'- -CAGGGCggCUUGGc------------GUGUGGGCaGCG- -5'
22574 5' -60.1 NC_005091.1 + 17634 0.66 0.486363
Target:  5'- gGUUgCGUCGAcacgcucccgGCCGCGCAUCU-UCGCa -3'
miRNA:   3'- -CAGgGCGGCU----------UGGCGUGUGGGcAGCG- -5'
22574 5' -60.1 NC_005091.1 + 31409 0.66 0.486363
Target:  5'- cGUCgCGCCGAACgUGCAagGCCgCGugaUCGCu -3'
miRNA:   3'- -CAGgGCGGCUUG-GCGUg-UGG-GC---AGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.