miRNA display CGI


Results 1 - 20 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22585 5' -59.7 NC_005091.1 + 25140 0.65 0.45142
Target:  5'- cGGUGCAGCGgccgcccCGGacgcaccgaccGCCGCCAuAGCgaaGGCCg -3'
miRNA:   3'- -UUACGUCGC-------GUC-----------CGGCGGU-UCG---UCGG- -5'
22585 5' -59.7 NC_005091.1 + 43627 0.66 0.442655
Target:  5'- --aGCGGCGCAccuuuCUGCCAAGCGagaaauGCCc -3'
miRNA:   3'- uuaCGUCGCGUcc---GGCGGUUCGU------CGG- -5'
22585 5' -59.7 NC_005091.1 + 48820 0.66 0.442655
Target:  5'- --cGCuGCGCcguacGGCCGaugaCAuGCGGCCu -3'
miRNA:   3'- uuaCGuCGCGu----CCGGCg---GUuCGUCGG- -5'
22585 5' -59.7 NC_005091.1 + 16610 0.66 0.442655
Target:  5'- gAAUGCcucccuGCGCc-GCCuGCCAAGCcguGCCa -3'
miRNA:   3'- -UUACGu-----CGCGucCGG-CGGUUCGu--CGG- -5'
22585 5' -59.7 NC_005091.1 + 42308 0.66 0.423527
Target:  5'- --gGCAgGCGaaaggaauuaCAGGCCGCCGuugucgucGUAGCCc -3'
miRNA:   3'- uuaCGU-CGC----------GUCCGGCGGUu-------CGUCGG- -5'
22585 5' -59.7 NC_005091.1 + 55906 0.66 0.423527
Target:  5'- --gGC-GCaGCAGGCCGaCCAacugcgugcgcaGGCGGCg -3'
miRNA:   3'- uuaCGuCG-CGUCCGGC-GGU------------UCGUCGg -5'
22585 5' -59.7 NC_005091.1 + 9796 0.66 0.423527
Target:  5'- ----aAGCGUuaccGGGuCCGCUggGCGGCUg -3'
miRNA:   3'- uuacgUCGCG----UCC-GGCGGuuCGUCGG- -5'
22585 5' -59.7 NC_005091.1 + 18235 0.66 0.423527
Target:  5'- --cGCucgaucGC-CGGGCCGCgAAGCucGGCCg -3'
miRNA:   3'- uuaCGu-----CGcGUCCGGCGgUUCG--UCGG- -5'
22585 5' -59.7 NC_005091.1 + 16655 0.66 0.41415
Target:  5'- --cGCGGCccGUGGaGCCGCUgaAAGCGGUCc -3'
miRNA:   3'- uuaCGUCG--CGUC-CGGCGG--UUCGUCGG- -5'
22585 5' -59.7 NC_005091.1 + 57828 0.66 0.41415
Target:  5'- --cGaCGGCGCAGGUCGagCAgcaaucGGCGGUCg -3'
miRNA:   3'- uuaC-GUCGCGUCCGGCg-GU------UCGUCGG- -5'
22585 5' -59.7 NC_005091.1 + 7400 0.66 0.41415
Target:  5'- -cUGguGCGCcucGGCUugGUCGAGCuGCCc -3'
miRNA:   3'- uuACguCGCGu--CCGG--CGGUUCGuCGG- -5'
22585 5' -59.7 NC_005091.1 + 434 0.66 0.41415
Target:  5'- --cGaCGGCGCAGGUCGagCAgcaaucGGCGGUCg -3'
miRNA:   3'- uuaC-GUCGCGUCCGGCg-GU------UCGUCGG- -5'
22585 5' -59.7 NC_005091.1 + 11403 0.67 0.395785
Target:  5'- --cGCuGCGCuucGGCCuGCCccuguuucgcGGCGGCCa -3'
miRNA:   3'- uuaCGuCGCGu--CCGG-CGGu---------UCGUCGG- -5'
22585 5' -59.7 NC_005091.1 + 7246 0.67 0.394881
Target:  5'- cGUGuCGGCGCGGGUCucuuuuccuugGCCGGGgcguccuCGGCCg -3'
miRNA:   3'- uUAC-GUCGCGUCCGG-----------CGGUUC-------GUCGG- -5'
22585 5' -59.7 NC_005091.1 + 6712 0.67 0.386802
Target:  5'- --aGCGcGCGCucGGGCaugaaCGCCG-GCAGCCc -3'
miRNA:   3'- uuaCGU-CGCG--UCCG-----GCGGUuCGUCGG- -5'
22585 5' -59.7 NC_005091.1 + 52087 0.67 0.386802
Target:  5'- --cGCauuGGCGC-GGCCGUaugccgugaaaAGGCGGCCg -3'
miRNA:   3'- uuaCG---UCGCGuCCGGCGg----------UUCGUCGG- -5'
22585 5' -59.7 NC_005091.1 + 31782 0.67 0.386802
Target:  5'- --gGCAcgaGCAGGCCGCCGAcgAGCg -3'
miRNA:   3'- uuaCGUcg-CGUCCGGCGGUUcgUCGg -5'
22585 5' -59.7 NC_005091.1 + 22104 0.67 0.386802
Target:  5'- --cGCgAGCuGCAuaucGGCCGCaugggacGGCAGCCa -3'
miRNA:   3'- uuaCG-UCG-CGU----CCGGCGgu-----UCGUCGG- -5'
22585 5' -59.7 NC_005091.1 + 7194 0.67 0.383246
Target:  5'- --gGCGGCGCGuuaccuucgucuuGCCGgCAgcGGCGGCCg -3'
miRNA:   3'- uuaCGUCGCGUc------------CGGCgGU--UCGUCGG- -5'
22585 5' -59.7 NC_005091.1 + 50137 0.67 0.383246
Target:  5'- --aGgGGCGCAcuggaaccGGCCGCCcuucaucaucacGCGGCCg -3'
miRNA:   3'- uuaCgUCGCGU--------CCGGCGGuu----------CGUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.