miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22586 3' -53.4 NC_005091.1 + 56881 0.66 0.841542
Target:  5'- gCGGUGCAGCCaCGCcaUCGcgUUGCccGCg -3'
miRNA:   3'- -GUCGCGUUGGaGCGa-AGCuaAGCG--CG- -5'
22586 3' -53.4 NC_005091.1 + 38541 0.66 0.841542
Target:  5'- uCAGCGCGGCUgcgguuucUGCUUCGAUcUCG-GUu -3'
miRNA:   3'- -GUCGCGUUGGa-------GCGAAGCUA-AGCgCG- -5'
22586 3' -53.4 NC_005091.1 + 3998 0.66 0.841542
Target:  5'- aAGCGCGaauGCCUCGCgccgaucucUCGAUuUCGgaaGCc -3'
miRNA:   3'- gUCGCGU---UGGAGCGa--------AGCUA-AGCg--CG- -5'
22586 3' -53.4 NC_005091.1 + 52033 0.66 0.840659
Target:  5'- gAGCGUGACUuccucaaUCGCga-GAUaCGCGCc -3'
miRNA:   3'- gUCGCGUUGG-------AGCGaagCUAaGCGCG- -5'
22586 3' -53.4 NC_005091.1 + 3016 0.66 0.836216
Target:  5'- -cGCGUuGCCUCucgauagcccgcagaGCgagaacgCGAUUCGCGUg -3'
miRNA:   3'- guCGCGuUGGAG---------------CGaa-----GCUAAGCGCG- -5'
22586 3' -53.4 NC_005091.1 + 6525 0.66 0.832621
Target:  5'- uCAGCGCAGCgCgcaCGCUgcccUCGGga-GCGUc -3'
miRNA:   3'- -GUCGCGUUG-Ga--GCGA----AGCUaagCGCG- -5'
22586 3' -53.4 NC_005091.1 + 23858 0.66 0.832621
Target:  5'- aCGGagaGCGGCC-CGCa--GAUUCaGCGCa -3'
miRNA:   3'- -GUCg--CGUUGGaGCGaagCUAAG-CGCG- -5'
22586 3' -53.4 NC_005091.1 + 25723 0.66 0.832621
Target:  5'- -uGCGCGGCCa-GCUcggcgaUCGGcugcccgccgcaUUCGCGCu -3'
miRNA:   3'- guCGCGUUGGagCGA------AGCU------------AAGCGCG- -5'
22586 3' -53.4 NC_005091.1 + 51679 0.66 0.823486
Target:  5'- -cGCGCccguGCCgCGCUUCug--CGCGCc -3'
miRNA:   3'- guCGCGu---UGGaGCGAAGcuaaGCGCG- -5'
22586 3' -53.4 NC_005091.1 + 36624 0.66 0.823486
Target:  5'- cCGGgGCGACCgUCGCcgUCGAUacuggaaGUGCc -3'
miRNA:   3'- -GUCgCGUUGG-AGCGa-AGCUAag-----CGCG- -5'
22586 3' -53.4 NC_005091.1 + 29563 0.66 0.823486
Target:  5'- cCAGCGUccuACgUCGCUcgccCGGUUCGC-Cg -3'
miRNA:   3'- -GUCGCGu--UGgAGCGAa---GCUAAGCGcG- -5'
22586 3' -53.4 NC_005091.1 + 4660 0.66 0.823486
Target:  5'- -cGCGCAGCUcCGCgcgUCGuUUUGgGCc -3'
miRNA:   3'- guCGCGUUGGaGCGa--AGCuAAGCgCG- -5'
22586 3' -53.4 NC_005091.1 + 45999 0.66 0.814146
Target:  5'- gCGGCGCAACaccggcaaCUCggauGCUUCGAUgUCGaGCg -3'
miRNA:   3'- -GUCGCGUUG--------GAG----CGAAGCUA-AGCgCG- -5'
22586 3' -53.4 NC_005091.1 + 448 0.66 0.814146
Target:  5'- gAGCaGCAAUCg-GCggUCGAUcagCGCGCa -3'
miRNA:   3'- gUCG-CGUUGGagCGa-AGCUAa--GCGCG- -5'
22586 3' -53.4 NC_005091.1 + 57842 0.66 0.814146
Target:  5'- gAGCaGCAAUCg-GCggUCGAUcagCGCGCa -3'
miRNA:   3'- gUCG-CGUUGGagCGa-AGCUAa--GCGCG- -5'
22586 3' -53.4 NC_005091.1 + 7893 0.66 0.804612
Target:  5'- -uGuCGUAGCCUCGCgaCGGUUCGaUGg -3'
miRNA:   3'- guC-GCGUUGGAGCGaaGCUAAGC-GCg -5'
22586 3' -53.4 NC_005091.1 + 33552 0.66 0.803648
Target:  5'- gAGCGCGaaaucgcgcGCCUCGgcggagaCUUCcGAaagagcUUCGCGCa -3'
miRNA:   3'- gUCGCGU---------UGGAGC-------GAAG-CU------AAGCGCG- -5'
22586 3' -53.4 NC_005091.1 + 11386 0.67 0.785003
Target:  5'- gGGCGuCGGCCgcgucacgcugCGCUUCGGccugccccuguUUCGCGg -3'
miRNA:   3'- gUCGC-GUUGGa----------GCGAAGCU-----------AAGCGCg -5'
22586 3' -53.4 NC_005091.1 + 33423 0.67 0.785003
Target:  5'- gCAGgGCGuCCUCGCgagCGcgcUGCGCg -3'
miRNA:   3'- -GUCgCGUuGGAGCGaa-GCuaaGCGCG- -5'
22586 3' -53.4 NC_005091.1 + 5086 0.67 0.785003
Target:  5'- gCGGCGCAGga-CGCgaUCGAaugcUUCGCGCu -3'
miRNA:   3'- -GUCGCGUUggaGCGa-AGCU----AAGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.