miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22589 3' -59.5 NC_005091.1 + 49550 0.66 0.532557
Target:  5'- uUGGCcuGCUcGUCGCGCUcgugCGCUACGu -3'
miRNA:   3'- cGCCGcuCGAcUAGCGCGA----GCGGUGC- -5'
22589 3' -59.5 NC_005091.1 + 36407 0.66 0.531532
Target:  5'- aCGGCGgaugacaAGCgGGUCG-GCaCGCCGCGa -3'
miRNA:   3'- cGCCGC-------UCGaCUAGCgCGaGCGGUGC- -5'
22589 3' -59.5 NC_005091.1 + 20339 0.66 0.530508
Target:  5'- aGCGGCGAcGCgucggccgauucGAUCaCGCUCGaCUGCGc -3'
miRNA:   3'- -CGCCGCU-CGa-----------CUAGcGCGAGC-GGUGC- -5'
22589 3' -59.5 NC_005091.1 + 34949 0.66 0.522339
Target:  5'- gGCGGCG-GCggacuUGAagGCGCgUCGCgGCu -3'
miRNA:   3'- -CGCCGCuCG-----ACUagCGCG-AGCGgUGc -5'
22589 3' -59.5 NC_005091.1 + 43988 0.66 0.516244
Target:  5'- cGgGGUGAGCUGGgagaaguagaCGCGCuucucgauaugcaggUCGCCGgGa -3'
miRNA:   3'- -CgCCGCUCGACUa---------GCGCG---------------AGCGGUgC- -5'
22589 3' -59.5 NC_005091.1 + 44 0.66 0.512197
Target:  5'- -gGGCGuuccuaucauggGGCUGAUUuccauucaagGCGUgCGCCACGg -3'
miRNA:   3'- cgCCGC------------UCGACUAG----------CGCGaGCGGUGC- -5'
22589 3' -59.5 NC_005091.1 + 57438 0.66 0.512197
Target:  5'- -gGGCGuuccuaucauggGGCUGAUUuccauucaagGCGUgCGCCACGg -3'
miRNA:   3'- cgCCGC------------UCGACUAG----------CGCGaGCGGUGC- -5'
22589 3' -59.5 NC_005091.1 + 29855 0.66 0.512197
Target:  5'- aGUGGuCGGGUUGAgCGCGUUCcgGCCcugACGa -3'
miRNA:   3'- -CGCC-GCUCGACUaGCGCGAG--CGG---UGC- -5'
22589 3' -59.5 NC_005091.1 + 57177 0.66 0.502137
Target:  5'- gGCGGCGAagacGCUGuUCaaCGUUCGgCCAUGg -3'
miRNA:   3'- -CGCCGCU----CGACuAGc-GCGAGC-GGUGC- -5'
22589 3' -59.5 NC_005091.1 + 6571 0.66 0.502137
Target:  5'- gGCGGCaccauGCgGAU-GCGUUCGCCAUc -3'
miRNA:   3'- -CGCCGcu---CGaCUAgCGCGAGCGGUGc -5'
22589 3' -59.5 NC_005091.1 + 51672 0.66 0.501135
Target:  5'- -gGGCGAGC-GAUcaucgcgucauaCGCGCUCGUaucguaaCGCGg -3'
miRNA:   3'- cgCCGCUCGaCUA------------GCGCGAGCG-------GUGC- -5'
22589 3' -59.5 NC_005091.1 + 22761 0.66 0.492164
Target:  5'- cGCGGCGuucaGGC-GcgUGCGCUCGgCAuCGa -3'
miRNA:   3'- -CGCCGC----UCGaCuaGCGCGAGCgGU-GC- -5'
22589 3' -59.5 NC_005091.1 + 3920 0.67 0.486224
Target:  5'- uCGGCGcgaGGCau-UCGCGCUugcucucgaagcggcCGCCACGa -3'
miRNA:   3'- cGCCGC---UCGacuAGCGCGA---------------GCGGUGC- -5'
22589 3' -59.5 NC_005091.1 + 42429 0.67 0.482284
Target:  5'- aCGGCGAGgaa---GCGCUCGCCGa- -3'
miRNA:   3'- cGCCGCUCgacuagCGCGAGCGGUgc -5'
22589 3' -59.5 NC_005091.1 + 57212 0.67 0.482284
Target:  5'- gGCGGCGAgucgcggaaGCUGGcguUCGauauacagcCGCUCGgCCGCa -3'
miRNA:   3'- -CGCCGCU---------CGACU---AGC---------GCGAGC-GGUGc -5'
22589 3' -59.5 NC_005091.1 + 1084 0.67 0.476402
Target:  5'- cGCGGCaAGCUGAagcauaagucccggcUCGCGaUCGaCACGc -3'
miRNA:   3'- -CGCCGcUCGACU---------------AGCGCgAGCgGUGC- -5'
22589 3' -59.5 NC_005091.1 + 26325 0.67 0.4725
Target:  5'- cUGGCGGcCUGcUCGCGCccggcCGCUACGa -3'
miRNA:   3'- cGCCGCUcGACuAGCGCGa----GCGGUGC- -5'
22589 3' -59.5 NC_005091.1 + 16364 0.67 0.443773
Target:  5'- cGCGGCcaAGCgacgugGAaCGUGCUCGgCGCGu -3'
miRNA:   3'- -CGCCGc-UCGa-----CUaGCGCGAGCgGUGC- -5'
22589 3' -59.5 NC_005091.1 + 31023 0.67 0.443773
Target:  5'- aCGGUGAGCgccgGAUCGCGgC-CGaaguCCACGc -3'
miRNA:   3'- cGCCGCUCGa---CUAGCGC-GaGC----GGUGC- -5'
22589 3' -59.5 NC_005091.1 + 42630 0.67 0.442832
Target:  5'- uCGGCGAGCgcgaGAUCGaaaacaccaucuaCGCcggUUGCCGCGu -3'
miRNA:   3'- cGCCGCUCGa---CUAGC-------------GCG---AGCGGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.