Results 21 - 40 of 54 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22589 | 3' | -59.5 | NC_005091.1 | + | 45506 | 0.74 | 0.173382 |
Target: 5'- cGCaGGCGaAGUUGAagaCGUgGCUCGCCACGg -3' miRNA: 3'- -CG-CCGC-UCGACUa--GCG-CGAGCGGUGC- -5' |
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22589 | 3' | -59.5 | NC_005091.1 | + | 401 | 0.73 | 0.207864 |
Target: 5'- aGCGGCGGGgaGAgCGCGCgguucucaCGCaCGCGa -3' miRNA: 3'- -CGCCGCUCgaCUaGCGCGa-------GCG-GUGC- -5' |
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22589 | 3' | -59.5 | NC_005091.1 | + | 57795 | 0.73 | 0.207864 |
Target: 5'- aGCGGCGGGgaGAgCGCGCgguucucaCGCaCGCGa -3' miRNA: 3'- -CGCCGCUCgaCUaGCGCGa-------GCG-GUGC- -5' |
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22589 | 3' | -59.5 | NC_005091.1 | + | 9266 | 0.71 | 0.267248 |
Target: 5'- cCGGCGAa-UGGUCGacuGCUCGCCGCu -3' miRNA: 3'- cGCCGCUcgACUAGCg--CGAGCGGUGc -5' |
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22589 | 3' | -59.5 | NC_005091.1 | + | 52943 | 0.69 | 0.363099 |
Target: 5'- gGCGaacgaacGCGAGCaGccguUCGCcauGCUCGCCGCGa -3' miRNA: 3'- -CGC-------CGCUCGaCu---AGCG---CGAGCGGUGC- -5' |
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22589 | 3' | -59.5 | NC_005091.1 | + | 24317 | 0.7 | 0.324072 |
Target: 5'- cGCGGCGAuagGCUGGccgucgaccgUCGUGC-CGCCGa- -3' miRNA: 3'- -CGCCGCU---CGACU----------AGCGCGaGCGGUgc -5' |
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22589 | 3' | -59.5 | NC_005091.1 | + | 8226 | 0.7 | 0.316502 |
Target: 5'- aGCGGaCGuGCUGAUCGCGgUacuggGCgGCGu -3' miRNA: 3'- -CGCC-GCuCGACUAGCGCgAg----CGgUGC- -5' |
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22589 | 3' | -59.5 | NC_005091.1 | + | 52027 | 0.7 | 0.294594 |
Target: 5'- cGgGGCGAGCgUGAcuuccucaaUCGCGagauacgCGCCGCGc -3' miRNA: 3'- -CgCCGCUCG-ACU---------AGCGCga-----GCGGUGC- -5' |
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22589 | 3' | -59.5 | NC_005091.1 | + | 49508 | 0.71 | 0.273887 |
Target: 5'- aGCGGCaGGCaGAaCGCGC-CaGCCACGg -3' miRNA: 3'- -CGCCGcUCGaCUaGCGCGaG-CGGUGC- -5' |
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22589 | 3' | -59.5 | NC_005091.1 | + | 52875 | 0.68 | 0.425176 |
Target: 5'- cGCGuGCGGcCUGAUCGC---CGCCGCGu -3' miRNA: 3'- -CGC-CGCUcGACUAGCGcgaGCGGUGC- -5' |
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22589 | 3' | -59.5 | NC_005091.1 | + | 42630 | 0.67 | 0.442832 |
Target: 5'- uCGGCGAGCgcgaGAUCGaaaacaccaucuaCGCcggUUGCCGCGu -3' miRNA: 3'- cGCCGCUCGa---CUAGC-------------GCG---AGCGGUGC- -5' |
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22589 | 3' | -59.5 | NC_005091.1 | + | 16364 | 0.67 | 0.443773 |
Target: 5'- cGCGGCcaAGCgacgugGAaCGUGCUCGgCGCGu -3' miRNA: 3'- -CGCCGc-UCGa-----CUaGCGCGAGCgGUGC- -5' |
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22589 | 3' | -59.5 | NC_005091.1 | + | 57212 | 0.67 | 0.482284 |
Target: 5'- gGCGGCGAgucgcggaaGCUGGcguUCGauauacagcCGCUCGgCCGCa -3' miRNA: 3'- -CGCCGCU---------CGACU---AGC---------GCGAGC-GGUGc -5' |
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22589 | 3' | -59.5 | NC_005091.1 | + | 42429 | 0.67 | 0.482284 |
Target: 5'- aCGGCGAGgaa---GCGCUCGCCGa- -3' miRNA: 3'- cGCCGCUCgacuagCGCGAGCGGUgc -5' |
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22589 | 3' | -59.5 | NC_005091.1 | + | 6571 | 0.66 | 0.502137 |
Target: 5'- gGCGGCaccauGCgGAU-GCGUUCGCCAUc -3' miRNA: 3'- -CGCCGcu---CGaCUAgCGCGAGCGGUGc -5' |
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22589 | 3' | -59.5 | NC_005091.1 | + | 29855 | 0.66 | 0.512197 |
Target: 5'- aGUGGuCGGGUUGAgCGCGUUCcgGCCcugACGa -3' miRNA: 3'- -CGCC-GCUCGACUaGCGCGAG--CGG---UGC- -5' |
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22589 | 3' | -59.5 | NC_005091.1 | + | 34949 | 0.66 | 0.522339 |
Target: 5'- gGCGGCG-GCggacuUGAagGCGCgUCGCgGCu -3' miRNA: 3'- -CGCCGCuCG-----ACUagCGCG-AGCGgUGc -5' |
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22589 | 3' | -59.5 | NC_005091.1 | + | 20339 | 0.66 | 0.530508 |
Target: 5'- aGCGGCGAcGCgucggccgauucGAUCaCGCUCGaCUGCGc -3' miRNA: 3'- -CGCCGCU-CGa-----------CUAGcGCGAGC-GGUGC- -5' |
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22589 | 3' | -59.5 | NC_005091.1 | + | 36407 | 0.66 | 0.531532 |
Target: 5'- aCGGCGgaugacaAGCgGGUCG-GCaCGCCGCGa -3' miRNA: 3'- cGCCGC-------UCGaCUAGCgCGaGCGGUGC- -5' |
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22589 | 3' | -59.5 | NC_005091.1 | + | 26123 | 1.11 | 0.000315 |
Target: 5'- cGCGGCGAGCUGAUCGCGCUCGCCACGg -3' miRNA: 3'- -CGCCGCUCGACUAGCGCGAGCGGUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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