miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22590 5' -56.2 NC_005091.1 + 41810 0.66 0.709572
Target:  5'- aUUGCUGCacgCGGCCGCcgUugaACGACc- -3'
miRNA:   3'- aAGCGACGa--GCUGGCGuaG---UGCUGcc -5'
22590 5' -56.2 NC_005091.1 + 57483 0.66 0.703185
Target:  5'- -gCGCUGCaUGACCGCGcaauuccagaggauuUCAUGGCc- -3'
miRNA:   3'- aaGCGACGaGCUGGCGU---------------AGUGCUGcc -5'
22590 5' -56.2 NC_005091.1 + 49050 0.66 0.698914
Target:  5'- -gCGCUGCUgCGcACCGUGU-GCgGGCGGg -3'
miRNA:   3'- aaGCGACGA-GC-UGGCGUAgUG-CUGCC- -5'
22590 5' -56.2 NC_005091.1 + 44119 0.66 0.698914
Target:  5'- cUUCGgcgacCUGCUCGACCGUgccgagcagaugAUCGgGGCGu -3'
miRNA:   3'- -AAGC-----GACGAGCUGGCG------------UAGUgCUGCc -5'
22590 5' -56.2 NC_005091.1 + 23981 0.66 0.698914
Target:  5'- aUCGUUGC-CGACgCGCGUCAUcuucugcacgaaGGCGu -3'
miRNA:   3'- aAGCGACGaGCUG-GCGUAGUG------------CUGCc -5'
22590 5' -56.2 NC_005091.1 + 52026 0.66 0.698914
Target:  5'- -gCGCa-CUCGGCuacuCGCGUCACGGCGu -3'
miRNA:   3'- aaGCGacGAGCUG----GCGUAGUGCUGCc -5'
22590 5' -56.2 NC_005091.1 + 24903 0.66 0.688193
Target:  5'- -aCGCUGaagaacggcuucCUCGGCggccugCGCAgCACGGCGGa -3'
miRNA:   3'- aaGCGAC------------GAGCUG------GCGUaGUGCUGCC- -5'
22590 5' -56.2 NC_005091.1 + 14209 0.66 0.688193
Target:  5'- -cCGCgaaGC-CGAUaCGCAUCGUGACGGg -3'
miRNA:   3'- aaGCGa--CGaGCUG-GCGUAGUGCUGCC- -5'
22590 5' -56.2 NC_005091.1 + 16345 0.66 0.677419
Target:  5'- -aCG-UGCUCGGCgCGUucGUCGCGAgCGGc -3'
miRNA:   3'- aaGCgACGAGCUG-GCG--UAGUGCU-GCC- -5'
22590 5' -56.2 NC_005091.1 + 53050 0.66 0.666603
Target:  5'- gUUCGCUGaucgCGGCgaGCAUgGCGaACGGc -3'
miRNA:   3'- -AAGCGACga--GCUGg-CGUAgUGC-UGCC- -5'
22590 5' -56.2 NC_005091.1 + 41786 0.66 0.666603
Target:  5'- -gCGCaGUUCGAgCGCGUgAUGACGc -3'
miRNA:   3'- aaGCGaCGAGCUgGCGUAgUGCUGCc -5'
22590 5' -56.2 NC_005091.1 + 50662 0.66 0.660097
Target:  5'- -aCGCUGUUgCGcgacuACCGCAccggcaacauccgccUUACGACGGu -3'
miRNA:   3'- aaGCGACGA-GC-----UGGCGU---------------AGUGCUGCC- -5'
22590 5' -56.2 NC_005091.1 + 48707 0.66 0.655755
Target:  5'- --gGCUGCUgCGuguuggugucGCCGCGUCACuaGACGa -3'
miRNA:   3'- aagCGACGA-GC----------UGGCGUAGUG--CUGCc -5'
22590 5' -56.2 NC_005091.1 + 44574 0.66 0.655755
Target:  5'- -gCGCcuuCUCGGCCGCGUCguACGugGc -3'
miRNA:   3'- aaGCGac-GAGCUGGCGUAG--UGCugCc -5'
22590 5' -56.2 NC_005091.1 + 40732 0.67 0.644886
Target:  5'- -gCGCUGCgCGuACCGagaauUCGCGACGcGg -3'
miRNA:   3'- aaGCGACGaGC-UGGCgu---AGUGCUGC-C- -5'
22590 5' -56.2 NC_005091.1 + 3932 0.67 0.643799
Target:  5'- aUUCGCgcuUGCUcucgaagCGGCCGC--CACGAUGGu -3'
miRNA:   3'- -AAGCG---ACGA-------GCUGGCGuaGUGCUGCC- -5'
22590 5' -56.2 NC_005091.1 + 5870 0.67 0.634006
Target:  5'- aUCGCggauagGCUUGGCUGgAUCGCuGuCGGg -3'
miRNA:   3'- aAGCGa-----CGAGCUGGCgUAGUG-CuGCC- -5'
22590 5' -56.2 NC_005091.1 + 11067 0.67 0.634006
Target:  5'- uUUCGUuaUGUUCGACCauuuGUuUCAgGACGGg -3'
miRNA:   3'- -AAGCG--ACGAGCUGG----CGuAGUgCUGCC- -5'
22590 5' -56.2 NC_005091.1 + 26336 0.67 0.623124
Target:  5'- cUCGC-GCcCGGCCGC--UACGAUGGc -3'
miRNA:   3'- aAGCGaCGaGCUGGCGuaGUGCUGCC- -5'
22590 5' -56.2 NC_005091.1 + 6457 0.67 0.61225
Target:  5'- -gCGCUGCgcugaaGGaaGCAggCGCGACGGa -3'
miRNA:   3'- aaGCGACGag----CUggCGUa-GUGCUGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.