miRNA display CGI


Results 1 - 20 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22596 5' -55.4 NC_005091.1 + 2216 0.68 0.608392
Target:  5'- uCCGcuu-CGGCCGACGcgcUUACCGGCACc -3'
miRNA:   3'- -GGCcuacGUCGGCUGU---AGUGGCUGUG- -5'
22596 5' -55.4 NC_005091.1 + 3346 0.68 0.634532
Target:  5'- gCCGGuGUGCaAGCCGAUcaugcgcggguugaaGUCAUCGAUcgaGCg -3'
miRNA:   3'- -GGCC-UACG-UCGGCUG---------------UAGUGGCUG---UG- -5'
22596 5' -55.4 NC_005091.1 + 4217 0.66 0.737551
Target:  5'- cCCGGcgGCGcGCC--CGUCACCGugccguacgucaGCACg -3'
miRNA:   3'- -GGCCuaCGU-CGGcuGUAGUGGC------------UGUG- -5'
22596 5' -55.4 NC_005091.1 + 5299 0.7 0.522733
Target:  5'- uCCGGG-GCGGCCGuuGCAcuccuugCACCGuGCGCg -3'
miRNA:   3'- -GGCCUaCGUCGGC--UGUa------GUGGC-UGUG- -5'
22596 5' -55.4 NC_005091.1 + 6720 0.66 0.71019
Target:  5'- uUGGcUGCGGUCGcCGUCGCCaacaagaagcagcccGGCACg -3'
miRNA:   3'- gGCCuACGUCGGCuGUAGUGG---------------CUGUG- -5'
22596 5' -55.4 NC_005091.1 + 7196 0.66 0.741702
Target:  5'- aCGGAUggcggcgagcagcgaGCGGCCGACGUuccggucuucaaCGCC-ACGCu -3'
miRNA:   3'- gGCCUA---------------CGUCGGCUGUA------------GUGGcUGUG- -5'
22596 5' -55.4 NC_005091.1 + 7438 0.68 0.642159
Target:  5'- gCCGG-UGuCAGCCGcguacuggacaaguuCGUCGCCGcCGCa -3'
miRNA:   3'- -GGCCuAC-GUCGGCu--------------GUAGUGGCuGUG- -5'
22596 5' -55.4 NC_005091.1 + 7497 0.68 0.630172
Target:  5'- gCCGGuucuucggGCAGCuCGACcaaGCCGAgGCg -3'
miRNA:   3'- -GGCCua------CGUCG-GCUGuagUGGCUgUG- -5'
22596 5' -55.4 NC_005091.1 + 8475 0.67 0.695235
Target:  5'- aUGGAUGCAGCCG-CG-CACgGAg-- -3'
miRNA:   3'- gGCCUACGUCGGCuGUaGUGgCUgug -5'
22596 5' -55.4 NC_005091.1 + 9200 0.66 0.758129
Target:  5'- gCCG--UGCAGCCGGCGaC-CCGAauCGCg -3'
miRNA:   3'- -GGCcuACGUCGGCUGUaGuGGCU--GUG- -5'
22596 5' -55.4 NC_005091.1 + 9348 0.69 0.543802
Target:  5'- gCGGcgaGCAGUCGACcauUCGCCGGC-Cg -3'
miRNA:   3'- gGCCua-CGUCGGCUGu--AGUGGCUGuG- -5'
22596 5' -55.4 NC_005091.1 + 10132 0.68 0.619277
Target:  5'- aCGGAcGUuacGCCGGCAcgCGCCGAgCGCc -3'
miRNA:   3'- gGCCUaCGu--CGGCUGUa-GUGGCU-GUG- -5'
22596 5' -55.4 NC_005091.1 + 10335 0.66 0.73651
Target:  5'- cCCGGAagaguacUGCGcgugucgcgcGcCCGACAUCGaggaCGGCGCg -3'
miRNA:   3'- -GGCCU-------ACGU----------C-GGCUGUAGUg---GCUGUG- -5'
22596 5' -55.4 NC_005091.1 + 11383 0.67 0.695235
Target:  5'- uCCGGgcGuCGGCCG-CGUCACgCuGCGCu -3'
miRNA:   3'- -GGCCuaC-GUCGGCuGUAGUG-GcUGUG- -5'
22596 5' -55.4 NC_005091.1 + 11427 0.68 0.619277
Target:  5'- uUCGcg-GCGGCC-ACGUCGgCCGACGCu -3'
miRNA:   3'- -GGCcuaCGUCGGcUGUAGU-GGCUGUG- -5'
22596 5' -55.4 NC_005091.1 + 11467 0.72 0.386494
Target:  5'- uCCGGcUGUAGCCGAaugCGCCGAggauCGCu -3'
miRNA:   3'- -GGCCuACGUCGGCUguaGUGGCU----GUG- -5'
22596 5' -55.4 NC_005091.1 + 11529 0.74 0.307627
Target:  5'- gCCGGAUcgucaaggcgaaagcGuCGGCCGACGUgGCCGcCGCg -3'
miRNA:   3'- -GGCCUA---------------C-GUCGGCUGUAgUGGCuGUG- -5'
22596 5' -55.4 NC_005091.1 + 11946 0.66 0.716557
Target:  5'- -aGGAUGUcguAGCCGuCGUcCugCGugACg -3'
miRNA:   3'- ggCCUACG---UCGGCuGUA-GugGCugUG- -5'
22596 5' -55.4 NC_005091.1 + 12802 0.66 0.7271
Target:  5'- aCCGGAaGCAGUCGAgG--GgCGAUACg -3'
miRNA:   3'- -GGCCUaCGUCGGCUgUagUgGCUGUG- -5'
22596 5' -55.4 NC_005091.1 + 13888 0.73 0.33892
Target:  5'- gCCGacGAUGCAGCCGucgucugguugaaccGCAgcuugUACCGGCGCg -3'
miRNA:   3'- -GGC--CUACGUCGGC---------------UGUa----GUGGCUGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.