miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22648 3' -54 NC_005091.1 + 19401 0.66 0.803027
Target:  5'- cGGCAUgUG-CGAGCGCGGCGCu---- -3'
miRNA:   3'- cUCGUA-ACgGCUCGCGUUGCGcaugg -5'
22648 3' -54 NC_005091.1 + 2076 0.66 0.803027
Target:  5'- cAGCAUgGCCGcgacAGCGUcgauguGCGUGUACa -3'
miRNA:   3'- cUCGUAaCGGC----UCGCGu-----UGCGCAUGg -5'
22648 3' -54 NC_005091.1 + 48836 0.66 0.803027
Target:  5'- cGGCc-UGCC--GCGUGugGCGUGCCc -3'
miRNA:   3'- cUCGuaACGGcuCGCGUugCGCAUGG- -5'
22648 3' -54 NC_005091.1 + 30309 0.66 0.803027
Target:  5'- cGGC-UUGCCcGGUGCGGCGUGaACg -3'
miRNA:   3'- cUCGuAACGGcUCGCGUUGCGCaUGg -5'
22648 3' -54 NC_005091.1 + 52166 0.66 0.802059
Target:  5'- cGGCAUacggccgcgccaaUGCggCGAauaucucgaagcGCGCGGCGCGUAUCu -3'
miRNA:   3'- cUCGUA-------------ACG--GCU------------CGCGUUGCGCAUGG- -5'
22648 3' -54 NC_005091.1 + 25062 0.66 0.793272
Target:  5'- ---gAUUGCCGcaAGCGCGGCGUucaACCg -3'
miRNA:   3'- cucgUAACGGC--UCGCGUUGCGca-UGG- -5'
22648 3' -54 NC_005091.1 + 49695 0.66 0.793272
Target:  5'- aGAGCcg-GUCGA-CGCAuuGCGCGUAgCu -3'
miRNA:   3'- -CUCGuaaCGGCUcGCGU--UGCGCAUgG- -5'
22648 3' -54 NC_005091.1 + 55877 0.66 0.793272
Target:  5'- cGAGCA--GUCG-GCGCAGcCGCaGUugCa -3'
miRNA:   3'- -CUCGUaaCGGCuCGCGUU-GCG-CAugG- -5'
22648 3' -54 NC_005091.1 + 33342 0.66 0.783346
Target:  5'- cGGCAaUGCCGGuuGCuGCGuCGCGU-CCg -3'
miRNA:   3'- cUCGUaACGGCU--CG-CGUuGCGCAuGG- -5'
22648 3' -54 NC_005091.1 + 46083 0.66 0.783346
Target:  5'- -cGCggUGCgCGAGCGCuucuucaGCGUccaGCCu -3'
miRNA:   3'- cuCGuaACG-GCUCGCGuug----CGCA---UGG- -5'
22648 3' -54 NC_005091.1 + 21266 0.66 0.783346
Target:  5'- cGAGCGc-GUCGAGCGUucaAGCGCagacgACCa -3'
miRNA:   3'- -CUCGUaaCGGCUCGCG---UUGCGca---UGG- -5'
22648 3' -54 NC_005091.1 + 53156 0.66 0.773261
Target:  5'- -cGCGUgauuccGCUGuAGCGCGcggGCGCGaGCCu -3'
miRNA:   3'- cuCGUAa-----CGGC-UCGCGU---UGCGCaUGG- -5'
22648 3' -54 NC_005091.1 + 51959 0.66 0.773261
Target:  5'- cGAGCcgucguUUGCCGAuGCGCu-CGCGauCCu -3'
miRNA:   3'- -CUCGu-----AACGGCU-CGCGuuGCGCauGG- -5'
22648 3' -54 NC_005091.1 + 55020 0.66 0.773261
Target:  5'- cGGCGcUUGgCGAGCGCGuUGCGgcgGCg -3'
miRNA:   3'- cUCGU-AACgGCUCGCGUuGCGCa--UGg -5'
22648 3' -54 NC_005091.1 + 34562 0.66 0.773261
Target:  5'- cAGCAUUGUCGAuGUaGCAGgcgagggauucCGCGUACa -3'
miRNA:   3'- cUCGUAACGGCU-CG-CGUU-----------GCGCAUGg -5'
22648 3' -54 NC_005091.1 + 21396 0.66 0.773261
Target:  5'- --aCGUUGCgucaucaagCGaAGCGUAguACGCGUACCg -3'
miRNA:   3'- cucGUAACG---------GC-UCGCGU--UGCGCAUGG- -5'
22648 3' -54 NC_005091.1 + 50859 0.66 0.772244
Target:  5'- cGAGCGUUGCCaAGCuggcccgcgaacuGCGGCucgauaucaaGCGUGCg -3'
miRNA:   3'- -CUCGUAACGGcUCG-------------CGUUG----------CGCAUGg -5'
22648 3' -54 NC_005091.1 + 17936 0.66 0.763027
Target:  5'- cGGUAgacgGCCG-GCGCGACggGUGUGCg -3'
miRNA:   3'- cUCGUaa--CGGCuCGCGUUG--CGCAUGg -5'
22648 3' -54 NC_005091.1 + 43790 0.67 0.752656
Target:  5'- aGAGCGc-GCCGAGCGCAuagaGCaugGCUu -3'
miRNA:   3'- -CUCGUaaCGGCUCGCGUug--CGca-UGG- -5'
22648 3' -54 NC_005091.1 + 22748 0.67 0.74216
Target:  5'- -cGCcg-GCCGucAGCGCGgcguucagGCGCGUGCg -3'
miRNA:   3'- cuCGuaaCGGC--UCGCGU--------UGCGCAUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.