miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22682 3' -54.2 NC_005091.1 + 23028 0.66 0.815327
Target:  5'- cGCCUGCcGCCGacgCC-AUCGCaucggGCACg -3'
miRNA:   3'- -UGGAUGcUGGCa--GGuUAGCGa----CGUGg -5'
22682 3' -54.2 NC_005091.1 + 45083 0.66 0.815327
Target:  5'- cCCUAUGcCCGcauggUUCGAUgCGCUGuCGCCg -3'
miRNA:   3'- uGGAUGCuGGC-----AGGUUA-GCGAC-GUGG- -5'
22682 3' -54.2 NC_005091.1 + 54824 0.66 0.815327
Target:  5'- aACUUcCGAcCCGUCCGG--GCgGCGCCa -3'
miRNA:   3'- -UGGAuGCU-GGCAGGUUagCGaCGUGG- -5'
22682 3' -54.2 NC_005091.1 + 10973 0.66 0.815327
Target:  5'- uGCCUACaGGCCGgccgCCGGgucgaGCUGUuucCCg -3'
miRNA:   3'- -UGGAUG-CUGGCa---GGUUag---CGACGu--GG- -5'
22682 3' -54.2 NC_005091.1 + 34236 0.66 0.805905
Target:  5'- gACCUgACGACgGccccacggcUUCGAUUGCUGUACg -3'
miRNA:   3'- -UGGA-UGCUGgC---------AGGUUAGCGACGUGg -5'
22682 3' -54.2 NC_005091.1 + 13393 0.66 0.796302
Target:  5'- cGCCUACGACC--UCGAUCGgUGgUACg -3'
miRNA:   3'- -UGGAUGCUGGcaGGUUAGCgAC-GUGg -5'
22682 3' -54.2 NC_005091.1 + 48803 0.66 0.796302
Target:  5'- gACCUA--GCUGUgaGAcgCGCUGCGCCg -3'
miRNA:   3'- -UGGAUgcUGGCAggUUa-GCGACGUGG- -5'
22682 3' -54.2 NC_005091.1 + 14474 0.66 0.796302
Target:  5'- cGCCguaGCGAUCGUgaCAgggcugcugaacGUCGgUGCGCCg -3'
miRNA:   3'- -UGGa--UGCUGGCAg-GU------------UAGCgACGUGG- -5'
22682 3' -54.2 NC_005091.1 + 36871 0.66 0.796302
Target:  5'- gACCgaguucGCuGGCCGUCCGAUCgGCcGCguauGCCu -3'
miRNA:   3'- -UGGa-----UG-CUGGCAGGUUAG-CGaCG----UGG- -5'
22682 3' -54.2 NC_005091.1 + 5299 0.66 0.786528
Target:  5'- uCCgggGCGGCCGUUgCAcUCcUUGCACCg -3'
miRNA:   3'- uGGa--UGCUGGCAG-GUuAGcGACGUGG- -5'
22682 3' -54.2 NC_005091.1 + 26974 0.66 0.786528
Target:  5'- cGCCUucuuCgCGUCCuucAUCGcCUGCGCCg -3'
miRNA:   3'- -UGGAugcuG-GCAGGu--UAGC-GACGUGG- -5'
22682 3' -54.2 NC_005091.1 + 38062 0.66 0.776593
Target:  5'- -----aGAUCGUCCugcgCGUUGCGCCu -3'
miRNA:   3'- uggaugCUGGCAGGuua-GCGACGUGG- -5'
22682 3' -54.2 NC_005091.1 + 52950 0.67 0.756287
Target:  5'- uACCUgaucGCGGCCGgCUGcaaacaaaucGUCGgaGCGCCg -3'
miRNA:   3'- -UGGA----UGCUGGCaGGU----------UAGCgaCGUGG- -5'
22682 3' -54.2 NC_005091.1 + 55938 0.67 0.756287
Target:  5'- gGCCgugcagcuCGugCG-CCAGUUgcugaccgGCUGCGCCg -3'
miRNA:   3'- -UGGau------GCugGCaGGUUAG--------CGACGUGG- -5'
22682 3' -54.2 NC_005091.1 + 15712 0.67 0.735474
Target:  5'- aACCUACuACCGcUCCAAcagCGCUccGCuuGCCg -3'
miRNA:   3'- -UGGAUGcUGGC-AGGUUa--GCGA--CG--UGG- -5'
22682 3' -54.2 NC_005091.1 + 50817 0.67 0.735474
Target:  5'- aGCgUGCGGCCGUCguGcgCGCgGCuauCCg -3'
miRNA:   3'- -UGgAUGCUGGCAGguUa-GCGaCGu--GG- -5'
22682 3' -54.2 NC_005091.1 + 15317 0.67 0.735474
Target:  5'- cCCUGCGauGCCGaCCAugugAUCGCcUGC-CCg -3'
miRNA:   3'- uGGAUGC--UGGCaGGU----UAGCG-ACGuGG- -5'
22682 3' -54.2 NC_005091.1 + 44481 0.67 0.724906
Target:  5'- aGCCcggACGaACCGggCUucuUCGCUGCACg -3'
miRNA:   3'- -UGGa--UGC-UGGCa-GGuu-AGCGACGUGg -5'
22682 3' -54.2 NC_005091.1 + 2732 0.67 0.724906
Target:  5'- cACCUGCGACaaCGggucuuccCCGAUaGuCUGCGCCg -3'
miRNA:   3'- -UGGAUGCUG--GCa-------GGUUAgC-GACGUGG- -5'
22682 3' -54.2 NC_005091.1 + 9965 0.67 0.714246
Target:  5'- gGCCccggcuCGAucCCGUCCGGUCaGCcaagcaccUGCACCg -3'
miRNA:   3'- -UGGau----GCU--GGCAGGUUAG-CG--------ACGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.