miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22726 3' -55 NC_005091.1 + 16686 0.65 0.759673
Target:  5'- ---gGCGGCGCagggagGCAuucccgacgcacCGAGCGACgGCGu -3'
miRNA:   3'- guuaCGCCGUGa-----CGU------------GCUCGCUG-UGC- -5'
22726 3' -55 NC_005091.1 + 5097 0.65 0.759673
Target:  5'- --cUGCGGgGCgUGaCAUGGGCGGCcCGu -3'
miRNA:   3'- guuACGCCgUG-AC-GUGCUCGCUGuGC- -5'
22726 3' -55 NC_005091.1 + 9282 0.66 0.749336
Target:  5'- gCGAUuCGGgucgccgGCUGCACG-GCGACGCa -3'
miRNA:   3'- -GUUAcGCCg------UGACGUGCuCGCUGUGc -5'
22726 3' -55 NC_005091.1 + 50580 0.66 0.749336
Target:  5'- cCGGUGCGGUAgUcGCGCaacAGCGuCGCGu -3'
miRNA:   3'- -GUUACGCCGUgA-CGUGc--UCGCuGUGC- -5'
22726 3' -55 NC_005091.1 + 56063 0.66 0.745166
Target:  5'- aGAUGCcggucGGCGCguccuacuucauCGCGGGCGACACc -3'
miRNA:   3'- gUUACG-----CCGUGac----------GUGCUCGCUGUGc -5'
22726 3' -55 NC_005091.1 + 38906 0.66 0.738878
Target:  5'- aGAUGCaGGCGCUugauUACGGGCGA-ACGg -3'
miRNA:   3'- gUUACG-CCGUGAc---GUGCUCGCUgUGC- -5'
22726 3' -55 NC_005091.1 + 31137 0.66 0.738878
Target:  5'- uCGAUGCgcuGGCGCUGUuCGAGCuGCGa- -3'
miRNA:   3'- -GUUACG---CCGUGACGuGCUCGcUGUgc -5'
22726 3' -55 NC_005091.1 + 6998 0.66 0.738878
Target:  5'- --cUGCuGGCGgaagGCAaggUGAGCGGCACGa -3'
miRNA:   3'- guuACG-CCGUga--CGU---GCUCGCUGUGC- -5'
22726 3' -55 NC_005091.1 + 14760 0.66 0.71765
Target:  5'- uCAGUGCGGUugUcgGCcCGGcCGAUACGa -3'
miRNA:   3'- -GUUACGCCGugA--CGuGCUcGCUGUGC- -5'
22726 3' -55 NC_005091.1 + 26221 0.66 0.714435
Target:  5'- aCGcgGCGGCAgcuucggcCUGagcggcagcccgaaUACGAGCGAgGCGa -3'
miRNA:   3'- -GUuaCGCCGU--------GAC--------------GUGCUCGCUgUGC- -5'
22726 3' -55 NC_005091.1 + 10142 0.66 0.706903
Target:  5'- ---cGcCGGCAC-GCGcCGAGCGccGCACGu -3'
miRNA:   3'- guuaC-GCCGUGaCGU-GCUCGC--UGUGC- -5'
22726 3' -55 NC_005091.1 + 31099 0.67 0.696083
Target:  5'- gCGAUcCGGCGCucaccgUGCaacugACGGGCGGCGCa -3'
miRNA:   3'- -GUUAcGCCGUG------ACG-----UGCUCGCUGUGc -5'
22726 3' -55 NC_005091.1 + 26752 0.67 0.696083
Target:  5'- --uUGCGGUAUUGaACGccuGCGACGCc -3'
miRNA:   3'- guuACGCCGUGACgUGCu--CGCUGUGc -5'
22726 3' -55 NC_005091.1 + 53208 0.67 0.674266
Target:  5'- aAGUGCGGCGaugaUGaaaugGCGGGCGGCGg- -3'
miRNA:   3'- gUUACGCCGUg---ACg----UGCUCGCUGUgc -5'
22726 3' -55 NC_005091.1 + 36394 0.67 0.663293
Target:  5'- ---aGCGGguCgGCACGccGCGACGCu -3'
miRNA:   3'- guuaCGCCguGaCGUGCu-CGCUGUGc -5'
22726 3' -55 NC_005091.1 + 13952 0.67 0.663293
Target:  5'- uCGGUGCGGacuCgggGguCGAGUGAUACGc -3'
miRNA:   3'- -GUUACGCCgu-Ga--CguGCUCGCUGUGC- -5'
22726 3' -55 NC_005091.1 + 6888 0.67 0.65229
Target:  5'- uGAUGUaGUAgaGCGCGAGCuGCGCGu -3'
miRNA:   3'- gUUACGcCGUgaCGUGCUCGcUGUGC- -5'
22726 3' -55 NC_005091.1 + 21831 0.67 0.65229
Target:  5'- ---cGCGGUcuugauuaaGCcGCGCGAGCGuCAUGa -3'
miRNA:   3'- guuaCGCCG---------UGaCGUGCUCGCuGUGC- -5'
22726 3' -55 NC_005091.1 + 52151 0.68 0.645678
Target:  5'- cCAAUGCGGCGaauaucucgaaGCGcGCGGCGCGu -3'
miRNA:   3'- -GUUACGCCGUgacg-------UGCuCGCUGUGC- -5'
22726 3' -55 NC_005091.1 + 44402 0.68 0.641268
Target:  5'- ---aGCGGCACUGCACauuGUGugguGCACc -3'
miRNA:   3'- guuaCGCCGUGACGUGcu-CGC----UGUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.