miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22729 5' -58.2 NC_005091.1 + 3541 0.66 0.554441
Target:  5'- gUCGCCGUcugccaGUUCGaCCG-GGUCAGCa- -3'
miRNA:   3'- aAGCGGUA------CGAGC-GGCgCUAGUCGcu -5'
22729 5' -58.2 NC_005091.1 + 12442 0.66 0.554441
Target:  5'- cUgGCCGcGCUCGUCGCGGUCuuuuuguauAGCc- -3'
miRNA:   3'- aAgCGGUaCGAGCGGCGCUAG---------UCGcu -5'
22729 5' -58.2 NC_005091.1 + 15714 0.66 0.543802
Target:  5'- -aUGCCGUGCccccggUUGuuGCGAUCuGCGc -3'
miRNA:   3'- aaGCGGUACG------AGCggCGCUAGuCGCu -5'
22729 5' -58.2 NC_005091.1 + 25647 0.66 0.543802
Target:  5'- aUCGCCGaGCUgGCCGCG--CAGUu- -3'
miRNA:   3'- aAGCGGUaCGAgCGGCGCuaGUCGcu -5'
22729 5' -58.2 NC_005091.1 + 29547 0.66 0.53323
Target:  5'- cUCGCCcgGUUCGCCGaaccgGGaCAGaCGAc -3'
miRNA:   3'- aAGCGGuaCGAGCGGCg----CUaGUC-GCU- -5'
22729 5' -58.2 NC_005091.1 + 32314 0.66 0.53323
Target:  5'- -aUGCC-UGCUuggCGCuCGCGGUCGGCc- -3'
miRNA:   3'- aaGCGGuACGA---GCG-GCGCUAGUCGcu -5'
22729 5' -58.2 NC_005091.1 + 33164 0.66 0.53323
Target:  5'- gUCGUCGUGUUCGagCGCGuuAUCGGCc- -3'
miRNA:   3'- aAGCGGUACGAGCg-GCGC--UAGUCGcu -5'
22729 5' -58.2 NC_005091.1 + 29695 0.66 0.53323
Target:  5'- --gGCCcucccGCUCGcCCGCaccgaGAUCGGCGAg -3'
miRNA:   3'- aagCGGua---CGAGC-GGCG-----CUAGUCGCU- -5'
22729 5' -58.2 NC_005091.1 + 9197 0.66 0.522733
Target:  5'- gUCGCCGUGCa-GCCGgCGAcccgaaUCGcGCGGu -3'
miRNA:   3'- aAGCGGUACGagCGGC-GCU------AGU-CGCU- -5'
22729 5' -58.2 NC_005091.1 + 54681 0.66 0.512316
Target:  5'- -gCGCCAUGCUgGaauCGCG--CGGCGAa -3'
miRNA:   3'- aaGCGGUACGAgCg--GCGCuaGUCGCU- -5'
22729 5' -58.2 NC_005091.1 + 20023 0.66 0.512316
Target:  5'- cUUCGCCAcgaacgGCguuaucacUGCCGUGggCGGCGAu -3'
miRNA:   3'- -AAGCGGUa-----CGa-------GCGGCGCuaGUCGCU- -5'
22729 5' -58.2 NC_005091.1 + 16340 0.66 0.512316
Target:  5'- cUCGgCGcGUUCGUCGCGAgCGGCGc -3'
miRNA:   3'- aAGCgGUaCGAGCGGCGCUaGUCGCu -5'
22729 5' -58.2 NC_005091.1 + 18229 0.66 0.511279
Target:  5'- aUCGCCGggccgcgaaGCUCgGCCGaccgacguguucuCGAUCAGCGu -3'
miRNA:   3'- aAGCGGUa--------CGAG-CGGC-------------GCUAGUCGCu -5'
22729 5' -58.2 NC_005091.1 + 930 0.67 0.501985
Target:  5'- -aCGCCAUGUUCGUCGCGua---CGAc -3'
miRNA:   3'- aaGCGGUACGAGCGGCGCuagucGCU- -5'
22729 5' -58.2 NC_005091.1 + 40903 0.67 0.501985
Target:  5'- gUCGCCGUccgGUUCGgCGCuuUCGGCGu -3'
miRNA:   3'- aAGCGGUA---CGAGCgGCGcuAGUCGCu -5'
22729 5' -58.2 NC_005091.1 + 36494 0.67 0.495831
Target:  5'- -gCGCCGUGCU-GCgGCGGccggaucgaagcggaUCAGCGc -3'
miRNA:   3'- aaGCGGUACGAgCGgCGCU---------------AGUCGCu -5'
22729 5' -58.2 NC_005091.1 + 49551 0.67 0.491748
Target:  5'- aUUgGCC-UGCUCGUCGCGcUCGuGCGc -3'
miRNA:   3'- -AAgCGGuACGAGCGGCGCuAGU-CGCu -5'
22729 5' -58.2 NC_005091.1 + 49806 0.67 0.481607
Target:  5'- -cUGCCgAUGCgaUCGCCGCGuUCguGGCGGc -3'
miRNA:   3'- aaGCGG-UACG--AGCGGCGCuAG--UCGCU- -5'
22729 5' -58.2 NC_005091.1 + 16028 0.67 0.481607
Target:  5'- -gCGUCGUGCU-GCCGCcGGcCGGCGGc -3'
miRNA:   3'- aaGCGGUACGAgCGGCG-CUaGUCGCU- -5'
22729 5' -58.2 NC_005091.1 + 25330 0.67 0.481607
Target:  5'- -aCGCCGUGggCGaCGUGAUCGGCc- -3'
miRNA:   3'- aaGCGGUACgaGCgGCGCUAGUCGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.