miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22734 3' -67.2 NC_005091.1 + 9288 0.66 0.242478
Target:  5'- cCGCUGGCCgccGACCggCUGgCCGUGCg- -3'
miRNA:   3'- -GCGGCCGG---CUGGagGGCgGGCGCGac -5'
22734 3' -67.2 NC_005091.1 + 51045 0.66 0.242478
Target:  5'- uCGCUuGCCGAUUUgCCCGUgcgcaCCGCGCUu -3'
miRNA:   3'- -GCGGcCGGCUGGA-GGGCG-----GGCGCGAc -5'
22734 3' -67.2 NC_005091.1 + 1543 0.66 0.236756
Target:  5'- gGCCGGCCG-CCggaUCGUCCG-GCUu -3'
miRNA:   3'- gCGGCCGGCuGGag-GGCGGGCgCGAc -5'
22734 3' -67.2 NC_005091.1 + 53820 0.66 0.231149
Target:  5'- aCGCCGgaauucacguuuGCCGGCUUCaauuuCCCGCGCUa -3'
miRNA:   3'- -GCGGC------------CGGCUGGAGggc--GGGCGCGAc -5'
22734 3' -67.2 NC_005091.1 + 30429 0.66 0.225654
Target:  5'- gGCCGGCCGAUgaCCuaCGCUacgcggguCGCGUUGu -3'
miRNA:   3'- gCGGCCGGCUGgaGG--GCGG--------GCGCGAC- -5'
22734 3' -67.2 NC_005091.1 + 26339 0.66 0.225654
Target:  5'- gCGcCCGGCCGcuacgauggcaGCC-CCggcgGCCCGCGCg- -3'
miRNA:   3'- -GC-GGCCGGC-----------UGGaGGg---CGGGCGCGac -5'
22734 3' -67.2 NC_005091.1 + 12104 0.66 0.225654
Target:  5'- -aCUGGCCGGCCaUCUgaaCGUCUGCGCg- -3'
miRNA:   3'- gcGGCCGGCUGG-AGG---GCGGGCGCGac -5'
22734 3' -67.2 NC_005091.1 + 32845 0.66 0.220269
Target:  5'- uCGaugaCGGCCaugaugGGCUUUUCGuCCCGCGCUGc -3'
miRNA:   3'- -GCg---GCCGG------CUGGAGGGC-GGGCGCGAC- -5'
22734 3' -67.2 NC_005091.1 + 48809 0.67 0.204772
Target:  5'- aCGCaUGGCCGuAUCUCCguguCGCUCGUGCa- -3'
miRNA:   3'- -GCG-GCCGGC-UGGAGG----GCGGGCGCGac -5'
22734 3' -67.2 NC_005091.1 + 44529 0.67 0.204772
Target:  5'- gGCCGucgcuGCCGucGCCUUcgucgCCGCCCGCGUc- -3'
miRNA:   3'- gCGGC-----CGGC--UGGAG-----GGCGGGCGCGac -5'
22734 3' -67.2 NC_005091.1 + 55686 0.67 0.204272
Target:  5'- uGCCGcaucacuucGCCGAUCgccgCCUGCacgagcgcguggaCCGCGCUGa -3'
miRNA:   3'- gCGGC---------CGGCUGGa---GGGCG-------------GGCGCGAC- -5'
22734 3' -67.2 NC_005091.1 + 33589 0.67 0.203275
Target:  5'- aGCCGugaugcggaucgauGCCGGCCUCUCGaCCUaugaGCGCg- -3'
miRNA:   3'- gCGGC--------------CGGCUGGAGGGC-GGG----CGCGac -5'
22734 3' -67.2 NC_005091.1 + 30890 0.67 0.194972
Target:  5'- aGCaCGuCCGACUUCaaCCGCUCGCGaCUGg -3'
miRNA:   3'- gCG-GCcGGCUGGAG--GGCGGGCGC-GAC- -5'
22734 3' -67.2 NC_005091.1 + 32100 0.67 0.194972
Target:  5'- cCGCCGGCCggguccgcgccGACUUCCgGgUUGCuGCUGg -3'
miRNA:   3'- -GCGGCCGG-----------CUGGAGGgCgGGCG-CGAC- -5'
22734 3' -67.2 NC_005091.1 + 28206 0.67 0.190228
Target:  5'- aCGCCGGCCGAaaUCCCGUCaCGaaCUu -3'
miRNA:   3'- -GCGGCCGGCUggAGGGCGG-GCgcGAc -5'
22734 3' -67.2 NC_005091.1 + 17634 0.67 0.185585
Target:  5'- gGuuGcGUCGACacgCUCCCGgCCGCGCa- -3'
miRNA:   3'- gCggC-CGGCUG---GAGGGCgGGCGCGac -5'
22734 3' -67.2 NC_005091.1 + 11439 0.67 0.181043
Target:  5'- aCGUCGGCCGACgCUUUCGCCuugacgaucCG-GCUGu -3'
miRNA:   3'- -GCGGCCGGCUG-GAGGGCGG---------GCgCGAC- -5'
22734 3' -67.2 NC_005091.1 + 3234 0.67 0.181043
Target:  5'- cCGCCGGCCgcucgaucgauGACUUCaa-CCCGCGCa- -3'
miRNA:   3'- -GCGGCCGG-----------CUGGAGggcGGGCGCGac -5'
22734 3' -67.2 NC_005091.1 + 53927 0.67 0.181043
Target:  5'- gCGCCaGCCGAaacaaugCCUGCCCGUGUg- -3'
miRNA:   3'- -GCGGcCGGCUgga----GGGCGGGCGCGac -5'
22734 3' -67.2 NC_005091.1 + 25654 0.67 0.181043
Target:  5'- aGCUGGCCGcgcaguUCUUCCGCCUGCacCUGc -3'
miRNA:   3'- gCGGCCGGCu-----GGAGGGCGGGCGc-GAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.