Results 21 - 40 of 93 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22872 | 5' | -49.5 | NC_005137.2 | + | 63949 | 0.68 | 0.984871 |
Target: 5'- -gCGCACCGUGuuGACGCGcuUGCAAg-- -3' miRNA: 3'- caGCGUGGCAU--UUGCGUu-GCGUUagc -5' |
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22872 | 5' | -49.5 | NC_005137.2 | + | 113944 | 0.68 | 0.988253 |
Target: 5'- --gGCACCGU---CGCGAUGCGAUa- -3' miRNA: 3'- cagCGUGGCAuuuGCGUUGCGUUAgc -5' |
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22872 | 5' | -49.5 | NC_005137.2 | + | 118645 | 0.66 | 0.995304 |
Target: 5'- -cCGCACCGUGcuauggaagguggacGACGCuGugGCAaaGUCc -3' miRNA: 3'- caGCGUGGCAU---------------UUGCG-UugCGU--UAGc -5' |
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22872 | 5' | -49.5 | NC_005137.2 | + | 44130 | 0.66 | 0.997414 |
Target: 5'- aUCGCACCGcaacggUGCGAuCGCAAUUc -3' miRNA: 3'- cAGCGUGGCauuu--GCGUU-GCGUUAGc -5' |
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22872 | 5' | -49.5 | NC_005137.2 | + | 101327 | 0.69 | 0.967084 |
Target: 5'- uUUGaCGCCGUcAACGCAAcCGCAAaCGa -3' miRNA: 3'- cAGC-GUGGCAuUUGCGUU-GCGUUaGC- -5' |
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22872 | 5' | -49.5 | NC_005137.2 | + | 110051 | 0.68 | 0.980794 |
Target: 5'- -gCGCGCCGcAGGCaGCAgACGcCAGUCGu -3' miRNA: 3'- caGCGUGGCaUUUG-CGU-UGC-GUUAGC- -5' |
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22872 | 5' | -49.5 | NC_005137.2 | + | 30755 | 0.67 | 0.989707 |
Target: 5'- -gCGCGcCCGUGcguUGCGGCGCccgGAUCGg -3' miRNA: 3'- caGCGU-GGCAUuu-GCGUUGCG---UUAGC- -5' |
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22872 | 5' | -49.5 | NC_005137.2 | + | 129380 | 0.66 | 0.997414 |
Target: 5'- uUUGCAUCGcagUAAACGCAACGU--UUGu -3' miRNA: 3'- cAGCGUGGC---AUUUGCGUUGCGuuAGC- -5' |
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22872 | 5' | -49.5 | NC_005137.2 | + | 20424 | 0.68 | 0.980794 |
Target: 5'- cGUCGCACaggaUGGGCGCGccaagACGCAGgugCGg -3' miRNA: 3'- -CAGCGUGgc--AUUUGCGU-----UGCGUUa--GC- -5' |
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22872 | 5' | -49.5 | NC_005137.2 | + | 78934 | 0.66 | 0.997414 |
Target: 5'- -aUGUACCGU--GCGaCAACGCGuuUCGc -3' miRNA: 3'- caGCGUGGCAuuUGC-GUUGCGUu-AGC- -5' |
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22872 | 5' | -49.5 | NC_005137.2 | + | 11450 | 0.68 | 0.988253 |
Target: 5'- cGUCGCucuACCG-AGGCuaAACGCAcUCGa -3' miRNA: 3'- -CAGCG---UGGCaUUUGcgUUGCGUuAGC- -5' |
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22872 | 5' | -49.5 | NC_005137.2 | + | 93560 | 0.68 | 0.982925 |
Target: 5'- -gCGCAaauaCGUGGuGCGCGGCGgCAAUCa -3' miRNA: 3'- caGCGUg---GCAUU-UGCGUUGC-GUUAGc -5' |
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22872 | 5' | -49.5 | NC_005137.2 | + | 92914 | 0.67 | 0.993241 |
Target: 5'- cGUUGC-CCGUGGGCuugucCGugGCGGUCa -3' miRNA: 3'- -CAGCGuGGCAUUUGc----GUugCGUUAGc -5' |
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22872 | 5' | -49.5 | NC_005137.2 | + | 82686 | 0.66 | 0.994923 |
Target: 5'- -cCGCcaagGCCGU--GCGCGaccagcuGCGCAAUCa -3' miRNA: 3'- caGCG----UGGCAuuUGCGU-------UGCGUUAGc -5' |
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22872 | 5' | -49.5 | NC_005137.2 | + | 52833 | 0.66 | 0.996369 |
Target: 5'- gGUCGUGuuGcUAAacaagcGCGUGACGCAAUCu -3' miRNA: 3'- -CAGCGUggC-AUU------UGCGUUGCGUUAGc -5' |
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22872 | 5' | -49.5 | NC_005137.2 | + | 68170 | 0.66 | 0.997414 |
Target: 5'- uUCGCACCGacAAACaaCAAUGCAAUUu -3' miRNA: 3'- cAGCGUGGCa-UUUGc-GUUGCGUUAGc -5' |
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22872 | 5' | -49.5 | NC_005137.2 | + | 51315 | 0.71 | 0.938001 |
Target: 5'- -gUGCGCCaaguAACGCAGCGgGGUCGu -3' miRNA: 3'- caGCGUGGcau-UUGCGUUGCgUUAGC- -5' |
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22872 | 5' | -49.5 | NC_005137.2 | + | 123820 | 0.7 | 0.963674 |
Target: 5'- -aCGCGCCGguucgAAAugcgcUGCAACGCGcgCGa -3' miRNA: 3'- caGCGUGGCa----UUU-----GCGUUGCGUuaGC- -5' |
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22872 | 5' | -49.5 | NC_005137.2 | + | 89630 | 0.69 | 0.970262 |
Target: 5'- -aUGCACCGUuu-UGUAcACGCAAUCa -3' miRNA: 3'- caGCGUGGCAuuuGCGU-UGCGUUAGc -5' |
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22872 | 5' | -49.5 | NC_005137.2 | + | 102814 | 0.69 | 0.978472 |
Target: 5'- cGUCGaguUUGUAcACGCGACGCuGUCGc -3' miRNA: 3'- -CAGCgu-GGCAUuUGCGUUGCGuUAGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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