miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22879 5' -56.1 NC_005137.2 + 43960 0.66 0.90512
Target:  5'- cGgGC-GCGUCCACCGccaugUUGUAcuCGCc -3'
miRNA:   3'- aCgCGcCGCAGGUGGCua---AGCAU--GCG- -5'
22879 5' -56.1 NC_005137.2 + 94365 0.66 0.898799
Target:  5'- aGCGCGGCcgagguggUCAUUGAcUCgGUGCGCc -3'
miRNA:   3'- aCGCGCCGca------GGUGGCUaAG-CAUGCG- -5'
22879 5' -56.1 NC_005137.2 + 83978 0.66 0.898799
Target:  5'- gGUGCaGGCGUCCAUgaCGGagCGacagauUGCGCg -3'
miRNA:   3'- aCGCG-CCGCAGGUG--GCUaaGC------AUGCG- -5'
22879 5' -56.1 NC_005137.2 + 76274 0.66 0.898799
Target:  5'- uUGUGC-GCG-CCAaCGAUUCGUACa- -3'
miRNA:   3'- -ACGCGcCGCaGGUgGCUAAGCAUGcg -5'
22879 5' -56.1 NC_005137.2 + 91194 0.66 0.898799
Target:  5'- gGCGCGGCGUUUgguuGCaCGcg-UGUugGCc -3'
miRNA:   3'- aCGCGCCGCAGG----UG-GCuaaGCAugCG- -5'
22879 5' -56.1 NC_005137.2 + 97992 0.66 0.896206
Target:  5'- cGCGCGGCGUgggugcgcCCGCCaaguggccagCGUGCa- -3'
miRNA:   3'- aCGCGCCGCA--------GGUGGcuaa------GCAUGcg -5'
22879 5' -56.1 NC_005137.2 + 102199 0.66 0.885469
Target:  5'- aGCaGUGGCGUCCGaaUUGAUUuugaCGaGCGCa -3'
miRNA:   3'- aCG-CGCCGCAGGU--GGCUAA----GCaUGCG- -5'
22879 5' -56.1 NC_005137.2 + 77957 0.66 0.878467
Target:  5'- cGCGCaccuuauucacGGUGUuuGCCGAguUUCGUGC-Ca -3'
miRNA:   3'- aCGCG-----------CCGCAggUGGCU--AAGCAUGcG- -5'
22879 5' -56.1 NC_005137.2 + 118090 0.66 0.878467
Target:  5'- aGUGguagaGGCGUuuGCCGAUUa-UGCGCu -3'
miRNA:   3'- aCGCg----CCGCAggUGGCUAAgcAUGCG- -5'
22879 5' -56.1 NC_005137.2 + 51398 0.66 0.878467
Target:  5'- aGCGCGGCcgcUCCACUaauuGAUaugCG-ACGCu -3'
miRNA:   3'- aCGCGCCGc--AGGUGG----CUAa--GCaUGCG- -5'
22879 5' -56.1 NC_005137.2 + 54418 0.67 0.871247
Target:  5'- --gGCGGCGUCCAacaCGAgcaugugaUCGgGCGUg -3'
miRNA:   3'- acgCGCCGCAGGUg--GCUa-------AGCaUGCG- -5'
22879 5' -56.1 NC_005137.2 + 31690 0.67 0.871247
Target:  5'- cGCGUGGUugugcgGUCgCACCGA--CGUGUGCa -3'
miRNA:   3'- aCGCGCCG------CAG-GUGGCUaaGCAUGCG- -5'
22879 5' -56.1 NC_005137.2 + 99197 0.67 0.871247
Target:  5'- -aCGCGGCauugggCCGCCGcaUCGcUGCGCc -3'
miRNA:   3'- acGCGCCGca----GGUGGCuaAGC-AUGCG- -5'
22879 5' -56.1 NC_005137.2 + 78722 0.67 0.863812
Target:  5'- gGCuGCGGC-UUCGgCGAUaaGUGCGCg -3'
miRNA:   3'- aCG-CGCCGcAGGUgGCUAagCAUGCG- -5'
22879 5' -56.1 NC_005137.2 + 69075 0.67 0.863812
Target:  5'- aGCGUGGCugaGUCCAUCGAcUCGg---- -3'
miRNA:   3'- aCGCGCCG---CAGGUGGCUaAGCaugcg -5'
22879 5' -56.1 NC_005137.2 + 79677 0.67 0.863812
Target:  5'- gGCGCGGCGgcggacgaccCCGCUGcgUUacuugGCGCa -3'
miRNA:   3'- aCGCGCCGCa---------GGUGGCuaAGca---UGCG- -5'
22879 5' -56.1 NC_005137.2 + 91061 0.67 0.863057
Target:  5'- aGUGUGGaCGUUCGaugaacUCGAUUCGUacuuguuGCGCg -3'
miRNA:   3'- aCGCGCC-GCAGGU------GGCUAAGCA-------UGCG- -5'
22879 5' -56.1 NC_005137.2 + 24400 0.67 0.859252
Target:  5'- gGaCGCGGCGUcaggCCGCCGuUucaaauugauagcacUCGUGgGCg -3'
miRNA:   3'- aC-GCGCCGCA----GGUGGCuA---------------AGCAUgCG- -5'
22879 5' -56.1 NC_005137.2 + 10707 0.67 0.85617
Target:  5'- gGCGUucgauGGCGUgCACCGcaUCGcgcACGCg -3'
miRNA:   3'- aCGCG-----CCGCAgGUGGCuaAGCa--UGCG- -5'
22879 5' -56.1 NC_005137.2 + 95647 0.67 0.85617
Target:  5'- cGUGCGcCGUgCGCCGAcgggcaaGUGCGCc -3'
miRNA:   3'- aCGCGCcGCAgGUGGCUaag----CAUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.