miRNA display CGI


Results 1 - 20 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22882 5' -59.1 NC_005137.2 + 95446 0.66 0.80731
Target:  5'- uGGCGCcg-GCGGUGCGUGucuugacaagcGCCGUguUGCc -3'
miRNA:   3'- -CCGCGcugCGCUACGCGC-----------UGGCA--GCG- -5'
22882 5' -59.1 NC_005137.2 + 38770 0.66 0.798673
Target:  5'- uGGCGC-ACGCugucguugguGAUGCGCGuCaCuUCGCu -3'
miRNA:   3'- -CCGCGcUGCG----------CUACGCGCuG-GcAGCG- -5'
22882 5' -59.1 NC_005137.2 + 63463 0.66 0.798673
Target:  5'- cGGCGCG-CGUu-UGUGCcGCC-UCGCg -3'
miRNA:   3'- -CCGCGCuGCGcuACGCGcUGGcAGCG- -5'
22882 5' -59.1 NC_005137.2 + 112399 0.66 0.798673
Target:  5'- uGCGCGAuCGCGcacgGCGCG-CCaUUGUg -3'
miRNA:   3'- cCGCGCU-GCGCua--CGCGCuGGcAGCG- -5'
22882 5' -59.1 NC_005137.2 + 59949 0.66 0.789894
Target:  5'- uGGCGCGccuCGuUGAUGCGCaugcCCGUaccuaGCa -3'
miRNA:   3'- -CCGCGCu--GC-GCUACGCGcu--GGCAg----CG- -5'
22882 5' -59.1 NC_005137.2 + 20376 0.66 0.789894
Target:  5'- cGcCGuCGGCGCGuuuGUGCaCGGCCGUCa- -3'
miRNA:   3'- cC-GC-GCUGCGC---UACGcGCUGGCAGcg -5'
22882 5' -59.1 NC_005137.2 + 17474 0.66 0.789894
Target:  5'- gGGUGUGGgGCuGGUggugGUGCaGCCGUUGCa -3'
miRNA:   3'- -CCGCGCUgCG-CUA----CGCGcUGGCAGCG- -5'
22882 5' -59.1 NC_005137.2 + 5871 0.66 0.78098
Target:  5'- cGGUGCauugucaaGACGUucGAgcgGCGCGGcCCGcCGCu -3'
miRNA:   3'- -CCGCG--------CUGCG--CUa--CGCGCU-GGCaGCG- -5'
22882 5' -59.1 NC_005137.2 + 12959 0.66 0.78098
Target:  5'- cGGCGCGGCcacaaaCGGUugGCaCGcAUCGUCGCa -3'
miRNA:   3'- -CCGCGCUGc-----GCUA--CGcGC-UGGCAGCG- -5'
22882 5' -59.1 NC_005137.2 + 13628 0.66 0.78098
Target:  5'- aGGCG-GACGUGaAUGgGUGAUUGaCGCc -3'
miRNA:   3'- -CCGCgCUGCGC-UACgCGCUGGCaGCG- -5'
22882 5' -59.1 NC_005137.2 + 78721 0.66 0.771942
Target:  5'- cGGCuGCGGCuucgGCGAuaagUGCGCGGucugcCCGggCGCc -3'
miRNA:   3'- -CCG-CGCUG----CGCU----ACGCGCU-----GGCa-GCG- -5'
22882 5' -59.1 NC_005137.2 + 75966 0.66 0.771942
Target:  5'- -uCGUGACGCGgcGCGCGuugguGCaCGgCGCa -3'
miRNA:   3'- ccGCGCUGCGCuaCGCGC-----UG-GCaGCG- -5'
22882 5' -59.1 NC_005137.2 + 107053 0.66 0.771942
Target:  5'- aGGCGCucgGACGaGGUGCGCuGCgCGUuuUGCa -3'
miRNA:   3'- -CCGCG---CUGCgCUACGCGcUG-GCA--GCG- -5'
22882 5' -59.1 NC_005137.2 + 99937 0.66 0.771942
Target:  5'- --gGCGACGCGcacgcAUGUuggacaacggccGCGGCCG-CGCg -3'
miRNA:   3'- ccgCGCUGCGC-----UACG------------CGCUGGCaGCG- -5'
22882 5' -59.1 NC_005137.2 + 63637 0.67 0.75352
Target:  5'- cGcCGCGGCGaCGGUcGCGCaucgCGUCGCg -3'
miRNA:   3'- cC-GCGCUGC-GCUA-CGCGcug-GCAGCG- -5'
22882 5' -59.1 NC_005137.2 + 12881 0.67 0.75352
Target:  5'- gGGCGCGGgGCGAaacagGUGGCCGaacacgagCGCa -3'
miRNA:   3'- -CCGCGCUgCGCUacg--CGCUGGCa-------GCG- -5'
22882 5' -59.1 NC_005137.2 + 11428 0.67 0.75352
Target:  5'- aGUGUGGCaCG-UGCucaGCGugCGUCGCu -3'
miRNA:   3'- cCGCGCUGcGCuACG---CGCugGCAGCG- -5'
22882 5' -59.1 NC_005137.2 + 34582 0.67 0.75352
Target:  5'- -aCGCaACGCGGcggGCGCGucGCCG-CGCg -3'
miRNA:   3'- ccGCGcUGCGCUa--CGCGC--UGGCaGCG- -5'
22882 5' -59.1 NC_005137.2 + 108104 0.67 0.744154
Target:  5'- -uUGUGguACGCGuUGCGCG-CCGaUCGCa -3'
miRNA:   3'- ccGCGC--UGCGCuACGCGCuGGC-AGCG- -5'
22882 5' -59.1 NC_005137.2 + 37543 0.67 0.744154
Target:  5'- cGGCGCuGGCGCGcacCGUGcCCGUaUGCa -3'
miRNA:   3'- -CCGCG-CUGCGCuacGCGCuGGCA-GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.