Results 1 - 20 of 72 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22883 | 5' | -54.1 | NC_005137.2 | + | 105835 | 0.66 | 0.958375 |
Target: 5'- cGGCAgaaccucCGCGUGCUccagacacggagGCGUGCGAguugGCCg -3' miRNA: 3'- cCUGUaa-----GCGCGUGG------------CGCACGCU----UGG- -5' |
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22883 | 5' | -54.1 | NC_005137.2 | + | 95908 | 0.66 | 0.95455 |
Target: 5'- -cGCGUUUGCGCcaaacaGCCGCGUGUa---- -3' miRNA: 3'- ccUGUAAGCGCG------UGGCGCACGcuugg -5' |
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22883 | 5' | -54.1 | NC_005137.2 | + | 48879 | 0.66 | 0.95455 |
Target: 5'- uGGaACAUguacUGCGCCGCGcUGCGGcuucGCCu -3' miRNA: 3'- -CC-UGUAagc-GCGUGGCGC-ACGCU----UGG- -5' |
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22883 | 5' | -54.1 | NC_005137.2 | + | 18604 | 0.66 | 0.95455 |
Target: 5'- -cACAaUgGCGCGCCGUGcGCGAucGCg -3' miRNA: 3'- ccUGUaAgCGCGUGGCGCaCGCU--UGg -5' |
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22883 | 5' | -54.1 | NC_005137.2 | + | 50760 | 0.66 | 0.953358 |
Target: 5'- cGGCGUUCGCGCcgucaucaaacgcaACCGCGc---AGCCg -3' miRNA: 3'- cCUGUAAGCGCG--------------UGGCGCacgcUUGG- -5' |
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22883 | 5' | -54.1 | NC_005137.2 | + | 10706 | 0.66 | 0.950495 |
Target: 5'- uGGCGUUCGauggcgugcacCGCAUCGCGcacGCGucgGCCa -3' miRNA: 3'- cCUGUAAGC-----------GCGUGGCGCa--CGCu--UGG- -5' |
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22883 | 5' | -54.1 | NC_005137.2 | + | 1846 | 0.66 | 0.950495 |
Target: 5'- cGACGa--GUGCACCGuCGUcGCGGcGCCu -3' miRNA: 3'- cCUGUaagCGCGUGGC-GCA-CGCU-UGG- -5' |
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22883 | 5' | -54.1 | NC_005137.2 | + | 58671 | 0.66 | 0.950495 |
Target: 5'- cGGcGCAgcUCGCGCAauUCGCGUuCGGACa -3' miRNA: 3'- -CC-UGUa-AGCGCGU--GGCGCAcGCUUGg -5' |
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22883 | 5' | -54.1 | NC_005137.2 | + | 20432 | 0.66 | 0.946204 |
Target: 5'- aGGAUGggCGCGCcaagaCGCagGUGCGGGCg -3' miRNA: 3'- -CCUGUaaGCGCGug---GCG--CACGCUUGg -5' |
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22883 | 5' | -54.1 | NC_005137.2 | + | 117568 | 0.66 | 0.946204 |
Target: 5'- cGGCAaa-GUGCGCCGCcgGUGCG-GCUg -3' miRNA: 3'- cCUGUaagCGCGUGGCG--CACGCuUGG- -5' |
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22883 | 5' | -54.1 | NC_005137.2 | + | 63940 | 0.66 | 0.946204 |
Target: 5'- aGAUgAUUUGCGCACCGUGUugacGCGcuuGCa -3' miRNA: 3'- cCUG-UAAGCGCGUGGCGCA----CGCu--UGg -5' |
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22883 | 5' | -54.1 | NC_005137.2 | + | 93465 | 0.66 | 0.941676 |
Target: 5'- cGGGCAcggUGCGCGCCaGCGccGUuuGCCg -3' miRNA: 3'- -CCUGUaa-GCGCGUGG-CGCa-CGcuUGG- -5' |
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22883 | 5' | -54.1 | NC_005137.2 | + | 21584 | 0.66 | 0.941676 |
Target: 5'- uGGGC---CGCGCauagGCCGCGguuuUGaCGAGCCc -3' miRNA: 3'- -CCUGuaaGCGCG----UGGCGC----AC-GCUUGG- -5' |
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22883 | 5' | -54.1 | NC_005137.2 | + | 98438 | 0.67 | 0.936908 |
Target: 5'- uGGCGguuaaaGCGCaagcaGCCGCGUGCacGGCCg -3' miRNA: 3'- cCUGUaag---CGCG-----UGGCGCACGc-UUGG- -5' |
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22883 | 5' | -54.1 | NC_005137.2 | + | 5884 | 0.67 | 0.936908 |
Target: 5'- aGACGUUCGaGCGgCGCG-GCccGCCg -3' miRNA: 3'- cCUGUAAGCgCGUgGCGCaCGcuUGG- -5' |
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22883 | 5' | -54.1 | NC_005137.2 | + | 35407 | 0.67 | 0.936908 |
Target: 5'- -aGCAcgUCGCGCACaGUGcGCGGGCg -3' miRNA: 3'- ccUGUa-AGCGCGUGgCGCaCGCUUGg -5' |
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22883 | 5' | -54.1 | NC_005137.2 | + | 70440 | 0.67 | 0.936908 |
Target: 5'- uGGCgGUUCGgGCACacguuugaGCGuUGCGAGCa -3' miRNA: 3'- cCUG-UAAGCgCGUGg-------CGC-ACGCUUGg -5' |
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22883 | 5' | -54.1 | NC_005137.2 | + | 112658 | 0.67 | 0.936418 |
Target: 5'- cGACAaaUUCGCGCACUGcCGUcucguagauuuugGCGu-CCg -3' miRNA: 3'- cCUGU--AAGCGCGUGGC-GCA-------------CGCuuGG- -5' |
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22883 | 5' | -54.1 | NC_005137.2 | + | 11145 | 0.67 | 0.931899 |
Target: 5'- -aACGUUUGUugGCugCGCGUGCc-ACCa -3' miRNA: 3'- ccUGUAAGCG--CGugGCGCACGcuUGG- -5' |
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22883 | 5' | -54.1 | NC_005137.2 | + | 38657 | 0.67 | 0.931899 |
Target: 5'- uGGGCAggCGCGCGuuGCG-GCa---- -3' miRNA: 3'- -CCUGUaaGCGCGUggCGCaCGcuugg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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