miRNA display CGI


Results 21 - 40 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22883 5' -54.1 NC_005137.2 + 30933 0.69 0.845258
Target:  5'- -cACGUgCGCGCGCCGCGgcacaaagcaUGCuGAACg -3'
miRNA:   3'- ccUGUAaGCGCGUGGCGC----------ACG-CUUGg -5'
22883 5' -54.1 NC_005137.2 + 94485 0.69 0.853256
Target:  5'- -uGCcgUCGUGCA-CGUGcGCGAACCc -3'
miRNA:   3'- ccUGuaAGCGCGUgGCGCaCGCUUGG- -5'
22883 5' -54.1 NC_005137.2 + 80917 0.69 0.86105
Target:  5'- -cGCAUUUGCGCgGCCGUGgagGCGcgcgucaauGGCCa -3'
miRNA:   3'- ccUGUAAGCGCG-UGGCGCa--CGC---------UUGG- -5'
22883 5' -54.1 NC_005137.2 + 98796 0.69 0.86105
Target:  5'- aGGcCAUUCGUcuGCcaaacGCCGcCGUGCGccGACCg -3'
miRNA:   3'- -CCuGUAAGCG--CG-----UGGC-GCACGC--UUGG- -5'
22883 5' -54.1 NC_005137.2 + 88015 0.69 0.86105
Target:  5'- gGGAUugccggCGCGgcCACCGCcgagGCGGGCCa -3'
miRNA:   3'- -CCUGuaa---GCGC--GUGGCGca--CGCUUGG- -5'
22883 5' -54.1 NC_005137.2 + 18122 0.69 0.867885
Target:  5'- cGGGUA--CGCGCAgcCCGCGUGCuaucacuuggaccGAGCCg -3'
miRNA:   3'- -CCUGUaaGCGCGU--GGCGCACG-------------CUUGG- -5'
22883 5' -54.1 NC_005137.2 + 73908 0.69 0.868634
Target:  5'- aGGGCGUcaucguuuUgGCGCGCC-CGUGCGugGACa -3'
miRNA:   3'- -CCUGUA--------AgCGCGUGGcGCACGC--UUGg -5'
22883 5' -54.1 NC_005137.2 + 33204 0.69 0.868634
Target:  5'- -cGCGUcgaagaGCGCACCGCGgucgaGAACCa -3'
miRNA:   3'- ccUGUAag----CGCGUGGCGCacg--CUUGG- -5'
22883 5' -54.1 NC_005137.2 + 24304 0.68 0.876002
Target:  5'- cGGCGUUUGCG-GCUGCGguggugGCGGGCa -3'
miRNA:   3'- cCUGUAAGCGCgUGGCGCa-----CGCUUGg -5'
22883 5' -54.1 NC_005137.2 + 48778 0.68 0.876002
Target:  5'- uGGACGcggCGcCGCACagCGUGUGCGGcACUa -3'
miRNA:   3'- -CCUGUaa-GC-GCGUG--GCGCACGCU-UGG- -5'
22883 5' -54.1 NC_005137.2 + 46167 0.68 0.883149
Target:  5'- cGGACG--UGCGCAUCaacaaGUGCGAcACCg -3'
miRNA:   3'- -CCUGUaaGCGCGUGGcg---CACGCU-UGG- -5'
22883 5' -54.1 NC_005137.2 + 21230 0.68 0.883149
Target:  5'- uGGGCGacgcUGCGgGCCGCGUGUc-ACCa -3'
miRNA:   3'- -CCUGUaa--GCGCgUGGCGCACGcuUGG- -5'
22883 5' -54.1 NC_005137.2 + 130620 0.68 0.885249
Target:  5'- cGGACA--CGCGCGCCGacaaagccagcaaaaGCGAGCUc -3'
miRNA:   3'- -CCUGUaaGCGCGUGGCgca------------CGCUUGG- -5'
22883 5' -54.1 NC_005137.2 + 98027 0.68 0.890069
Target:  5'- -uGCAcgUCGgGCGCUGCGaGCGggUCc -3'
miRNA:   3'- ccUGUa-AGCgCGUGGCGCaCGCuuGG- -5'
22883 5' -54.1 NC_005137.2 + 102925 0.68 0.890069
Target:  5'- cGGCAggC-CGCGCUGCGUGUacAGCCg -3'
miRNA:   3'- cCUGUaaGcGCGUGGCGCACGc-UUGG- -5'
22883 5' -54.1 NC_005137.2 + 96146 0.68 0.890069
Target:  5'- -cGCA-UCGCGUugcCCGcCGUGCGGuACCa -3'
miRNA:   3'- ccUGUaAGCGCGu--GGC-GCACGCU-UGG- -5'
22883 5' -54.1 NC_005137.2 + 67707 0.68 0.902581
Target:  5'- aGGGCGcgcgUUGUGC-CCGCGaGCGAcggcgagACCg -3'
miRNA:   3'- -CCUGUa---AGCGCGuGGCGCaCGCU-------UGG- -5'
22883 5' -54.1 NC_005137.2 + 33937 0.68 0.903216
Target:  5'- cGGCAUUCGCGCGCaCGUaUuuGAACa -3'
miRNA:   3'- cCUGUAAGCGCGUG-GCGcAcgCUUGg -5'
22883 5' -54.1 NC_005137.2 + 42135 0.68 0.903216
Target:  5'- -uGCGUUCGaCGCguggaACCGcCGUG-GAACCa -3'
miRNA:   3'- ccUGUAAGC-GCG-----UGGC-GCACgCUUGG- -5'
22883 5' -54.1 NC_005137.2 + 75979 0.68 0.903216
Target:  5'- -cGCGUUgGUGCACgGCGcaCGGGCCa -3'
miRNA:   3'- ccUGUAAgCGCGUGgCGCacGCUUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.