miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22887 3' -52.8 NC_005137.2 + 57442 0.66 0.977001
Target:  5'- cGUCGCGuacgaauCGGUgGACGccgcgcaacgaGGCCACgacGCc -3'
miRNA:   3'- aCAGCGUu------GCCAgCUGC-----------UUGGUGa--CG- -5'
22887 3' -52.8 NC_005137.2 + 98455 0.66 0.977001
Target:  5'- cGUCGCuauuugucgGugGGUUGACuAACCuaacGCUGUu -3'
miRNA:   3'- aCAGCG---------UugCCAGCUGcUUGG----UGACG- -5'
22887 3' -52.8 NC_005137.2 + 46036 0.66 0.974436
Target:  5'- aUGUUuaAACGG-CGccaACGAgguuaugccGCCGCUGCa -3'
miRNA:   3'- -ACAGcgUUGCCaGC---UGCU---------UGGUGACG- -5'
22887 3' -52.8 NC_005137.2 + 32984 0.66 0.974436
Target:  5'- -cUCGCAGCGccCGACGuGCaCGCUGg -3'
miRNA:   3'- acAGCGUUGCcaGCUGCuUG-GUGACg -5'
22887 3' -52.8 NC_005137.2 + 78629 0.66 0.974436
Target:  5'- aUGUCGCGGCccgucauGUCGGaGAAaaACUGCa -3'
miRNA:   3'- -ACAGCGUUGc------CAGCUgCUUggUGACG- -5'
22887 3' -52.8 NC_005137.2 + 109026 0.66 0.973628
Target:  5'- cG-CGCGugGGUUGGCuAcagcaggacuuuacGCCACUGUc -3'
miRNA:   3'- aCaGCGUugCCAGCUGcU--------------UGGUGACG- -5'
22887 3' -52.8 NC_005137.2 + 100211 0.66 0.972801
Target:  5'- gUGUUGCugguGCGcGUCGACGAcgacaaaaacucuauGCUAUauuUGCg -3'
miRNA:   3'- -ACAGCGu---UGC-CAGCUGCU---------------UGGUG---ACG- -5'
22887 3' -52.8 NC_005137.2 + 51282 0.66 0.97167
Target:  5'- cGUCGCAAUuugCGGCGGGCaGCgGCa -3'
miRNA:   3'- aCAGCGUUGccaGCUGCUUGgUGaCG- -5'
22887 3' -52.8 NC_005137.2 + 103809 0.66 0.97167
Target:  5'- aGUUGCugguguGCGG-CGGCGggUUGgUGCa -3'
miRNA:   3'- aCAGCGu-----UGCCaGCUGCuuGGUgACG- -5'
22887 3' -52.8 NC_005137.2 + 34599 0.66 0.968694
Target:  5'- cGUCGCcgcgcggguAGCGGUCGGCGcggcuCCAUa-- -3'
miRNA:   3'- aCAGCG---------UUGCCAGCUGCuu---GGUGacg -5'
22887 3' -52.8 NC_005137.2 + 26557 0.66 0.968694
Target:  5'- aGUCGUGGCGcugCGGCGuguCgACUGCc -3'
miRNA:   3'- aCAGCGUUGCca-GCUGCuu-GgUGACG- -5'
22887 3' -52.8 NC_005137.2 + 95478 0.66 0.968694
Target:  5'- gUGUUGCccACGGcCGGCcgGAACgAUUGCg -3'
miRNA:   3'- -ACAGCGu-UGCCaGCUG--CUUGgUGACG- -5'
22887 3' -52.8 NC_005137.2 + 21537 0.66 0.968694
Target:  5'- -aUCGUgauuaaaaaGugGGUCGACGAaacGCCGCguuggGUg -3'
miRNA:   3'- acAGCG---------UugCCAGCUGCU---UGGUGa----CG- -5'
22887 3' -52.8 NC_005137.2 + 124951 0.66 0.968694
Target:  5'- gGUUGCGAugaacgcggcgcCGGU-GAUGGGgCGCUGCg -3'
miRNA:   3'- aCAGCGUU------------GCCAgCUGCUUgGUGACG- -5'
22887 3' -52.8 NC_005137.2 + 8556 0.66 0.965503
Target:  5'- aUGUgCGCu-CGGcCGACGGaguagaccGCgCGCUGCa -3'
miRNA:   3'- -ACA-GCGuuGCCaGCUGCU--------UG-GUGACG- -5'
22887 3' -52.8 NC_005137.2 + 110426 0.67 0.958448
Target:  5'- ---gGCAACGGgcgCGACGGugagcgugcacACCGCgGCc -3'
miRNA:   3'- acagCGUUGCCa--GCUGCU-----------UGGUGaCG- -5'
22887 3' -52.8 NC_005137.2 + 50812 0.67 0.958448
Target:  5'- cGUCGagccCGGUaGACGggUUugUGCg -3'
miRNA:   3'- aCAGCguu-GCCAgCUGCuuGGugACG- -5'
22887 3' -52.8 NC_005137.2 + 87182 0.67 0.958448
Target:  5'- -aUCGCGuucgACGGgCG-CGGGCgGCUGCu -3'
miRNA:   3'- acAGCGU----UGCCaGCuGCUUGgUGACG- -5'
22887 3' -52.8 NC_005137.2 + 108135 0.67 0.954575
Target:  5'- --cCGCAuccCGGUCGuCGGGCgGCgGCg -3'
miRNA:   3'- acaGCGUu--GCCAGCuGCUUGgUGaCG- -5'
22887 3' -52.8 NC_005137.2 + 4236 0.67 0.950463
Target:  5'- -aUUGCGuCGGUCGGCGA--CACgUGCa -3'
miRNA:   3'- acAGCGUuGCCAGCUGCUugGUG-ACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.