Results 1 - 20 of 47 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
22887 | 3' | -52.8 | NC_005137.2 | + | 57442 | 0.66 | 0.977001 |
Target: 5'- cGUCGCGuacgaauCGGUgGACGccgcgcaacgaGGCCACgacGCc -3' miRNA: 3'- aCAGCGUu------GCCAgCUGC-----------UUGGUGa--CG- -5' |
|||||||
22887 | 3' | -52.8 | NC_005137.2 | + | 98455 | 0.66 | 0.977001 |
Target: 5'- cGUCGCuauuugucgGugGGUUGACuAACCuaacGCUGUu -3' miRNA: 3'- aCAGCG---------UugCCAGCUGcUUGG----UGACG- -5' |
|||||||
22887 | 3' | -52.8 | NC_005137.2 | + | 46036 | 0.66 | 0.974436 |
Target: 5'- aUGUUuaAACGG-CGccaACGAgguuaugccGCCGCUGCa -3' miRNA: 3'- -ACAGcgUUGCCaGC---UGCU---------UGGUGACG- -5' |
|||||||
22887 | 3' | -52.8 | NC_005137.2 | + | 32984 | 0.66 | 0.974436 |
Target: 5'- -cUCGCAGCGccCGACGuGCaCGCUGg -3' miRNA: 3'- acAGCGUUGCcaGCUGCuUG-GUGACg -5' |
|||||||
22887 | 3' | -52.8 | NC_005137.2 | + | 78629 | 0.66 | 0.974436 |
Target: 5'- aUGUCGCGGCccgucauGUCGGaGAAaaACUGCa -3' miRNA: 3'- -ACAGCGUUGc------CAGCUgCUUggUGACG- -5' |
|||||||
22887 | 3' | -52.8 | NC_005137.2 | + | 109026 | 0.66 | 0.973628 |
Target: 5'- cG-CGCGugGGUUGGCuAcagcaggacuuuacGCCACUGUc -3' miRNA: 3'- aCaGCGUugCCAGCUGcU--------------UGGUGACG- -5' |
|||||||
22887 | 3' | -52.8 | NC_005137.2 | + | 100211 | 0.66 | 0.972801 |
Target: 5'- gUGUUGCugguGCGcGUCGACGAcgacaaaaacucuauGCUAUauuUGCg -3' miRNA: 3'- -ACAGCGu---UGC-CAGCUGCU---------------UGGUG---ACG- -5' |
|||||||
22887 | 3' | -52.8 | NC_005137.2 | + | 103809 | 0.66 | 0.97167 |
Target: 5'- aGUUGCugguguGCGG-CGGCGggUUGgUGCa -3' miRNA: 3'- aCAGCGu-----UGCCaGCUGCuuGGUgACG- -5' |
|||||||
22887 | 3' | -52.8 | NC_005137.2 | + | 51282 | 0.66 | 0.97167 |
Target: 5'- cGUCGCAAUuugCGGCGGGCaGCgGCa -3' miRNA: 3'- aCAGCGUUGccaGCUGCUUGgUGaCG- -5' |
|||||||
22887 | 3' | -52.8 | NC_005137.2 | + | 34599 | 0.66 | 0.968694 |
Target: 5'- cGUCGCcgcgcggguAGCGGUCGGCGcggcuCCAUa-- -3' miRNA: 3'- aCAGCG---------UUGCCAGCUGCuu---GGUGacg -5' |
|||||||
22887 | 3' | -52.8 | NC_005137.2 | + | 124951 | 0.66 | 0.968694 |
Target: 5'- gGUUGCGAugaacgcggcgcCGGU-GAUGGGgCGCUGCg -3' miRNA: 3'- aCAGCGUU------------GCCAgCUGCUUgGUGACG- -5' |
|||||||
22887 | 3' | -52.8 | NC_005137.2 | + | 21537 | 0.66 | 0.968694 |
Target: 5'- -aUCGUgauuaaaaaGugGGUCGACGAaacGCCGCguuggGUg -3' miRNA: 3'- acAGCG---------UugCCAGCUGCU---UGGUGa----CG- -5' |
|||||||
22887 | 3' | -52.8 | NC_005137.2 | + | 95478 | 0.66 | 0.968694 |
Target: 5'- gUGUUGCccACGGcCGGCcgGAACgAUUGCg -3' miRNA: 3'- -ACAGCGu-UGCCaGCUG--CUUGgUGACG- -5' |
|||||||
22887 | 3' | -52.8 | NC_005137.2 | + | 26557 | 0.66 | 0.968694 |
Target: 5'- aGUCGUGGCGcugCGGCGuguCgACUGCc -3' miRNA: 3'- aCAGCGUUGCca-GCUGCuu-GgUGACG- -5' |
|||||||
22887 | 3' | -52.8 | NC_005137.2 | + | 8556 | 0.66 | 0.965503 |
Target: 5'- aUGUgCGCu-CGGcCGACGGaguagaccGCgCGCUGCa -3' miRNA: 3'- -ACA-GCGuuGCCaGCUGCU--------UG-GUGACG- -5' |
|||||||
22887 | 3' | -52.8 | NC_005137.2 | + | 110426 | 0.67 | 0.958448 |
Target: 5'- ---gGCAACGGgcgCGACGGugagcgugcacACCGCgGCc -3' miRNA: 3'- acagCGUUGCCa--GCUGCU-----------UGGUGaCG- -5' |
|||||||
22887 | 3' | -52.8 | NC_005137.2 | + | 50812 | 0.67 | 0.958448 |
Target: 5'- cGUCGagccCGGUaGACGggUUugUGCg -3' miRNA: 3'- aCAGCguu-GCCAgCUGCuuGGugACG- -5' |
|||||||
22887 | 3' | -52.8 | NC_005137.2 | + | 87182 | 0.67 | 0.958448 |
Target: 5'- -aUCGCGuucgACGGgCG-CGGGCgGCUGCu -3' miRNA: 3'- acAGCGU----UGCCaGCuGCUUGgUGACG- -5' |
|||||||
22887 | 3' | -52.8 | NC_005137.2 | + | 108135 | 0.67 | 0.954575 |
Target: 5'- --cCGCAuccCGGUCGuCGGGCgGCgGCg -3' miRNA: 3'- acaGCGUu--GCCAGCuGCUUGgUGaCG- -5' |
|||||||
22887 | 3' | -52.8 | NC_005137.2 | + | 89526 | 0.67 | 0.950463 |
Target: 5'- --aCGCAAUuaGGUCaACGu-CCGCUGCg -3' miRNA: 3'- acaGCGUUG--CCAGcUGCuuGGUGACG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home