miRNA display CGI


Results 1 - 20 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22888 3' -58.8 NC_005137.2 + 49401 0.66 0.778543
Target:  5'- uGUGCACgAcccugcuuAC-UGCuGCCGCGUCACGc -3'
miRNA:   3'- -CACGUGgU--------UGcGCG-CGGCGCAGUGCu -5'
22888 3' -58.8 NC_005137.2 + 63459 0.66 0.778543
Target:  5'- -cGC-UCGGCGCGCguuuguGCCGCcUCGCGGc -3'
miRNA:   3'- caCGuGGUUGCGCG------CGGCGcAGUGCU- -5'
22888 3' -58.8 NC_005137.2 + 56864 0.66 0.778543
Target:  5'- uGUGCACaauuuuaaaugCAAC-CGUGCCGUGccggCGCGAa -3'
miRNA:   3'- -CACGUG-----------GUUGcGCGCGGCGCa---GUGCU- -5'
22888 3' -58.8 NC_005137.2 + 31193 0.66 0.777622
Target:  5'- -cGCaACCGGCcCGCGUCGCccuuguaccagcgGUCGCGGc -3'
miRNA:   3'- caCG-UGGUUGcGCGCGGCG-------------CAGUGCU- -5'
22888 3' -58.8 NC_005137.2 + 58628 0.66 0.777622
Target:  5'- uUGCGCCGccgaauuGCGCGUGUacacuaGCGUgCACGc -3'
miRNA:   3'- cACGUGGU-------UGCGCGCGg-----CGCA-GUGCu -5'
22888 3' -58.8 NC_005137.2 + 31028 0.66 0.773001
Target:  5'- cGUGCGCUgcuggcgcacgaagaGGCGCGCGgCCGCGgC-CGu -3'
miRNA:   3'- -CACGUGG---------------UUGCGCGC-GGCGCaGuGCu -5'
22888 3' -58.8 NC_005137.2 + 20965 0.66 0.769281
Target:  5'- cUGcCugCGGCGCGCguuuuGCCGCGcuugCACGc -3'
miRNA:   3'- cAC-GugGUUGCGCG-----CGGCGCa---GUGCu -5'
22888 3' -58.8 NC_005137.2 + 55422 0.66 0.769281
Target:  5'- -cGCGCaCGGCGcCGC-CCGCGUC-CGc -3'
miRNA:   3'- caCGUG-GUUGC-GCGcGGCGCAGuGCu -5'
22888 3' -58.8 NC_005137.2 + 24678 0.66 0.769281
Target:  5'- uUGcCGCCAcCGC-CGUCGUgGUCACGAc -3'
miRNA:   3'- cAC-GUGGUuGCGcGCGGCG-CAGUGCU- -5'
22888 3' -58.8 NC_005137.2 + 34489 0.66 0.769281
Target:  5'- -cGCGUCAAuuUGCGCGCCGCuaGUCAUa- -3'
miRNA:   3'- caCGUGGUU--GCGCGCGGCG--CAGUGcu -5'
22888 3' -58.8 NC_005137.2 + 110038 0.66 0.763666
Target:  5'- -aGCGCggcaaAACGCGCGCCGCaggcagcagacgccaGUCgucGCGGu -3'
miRNA:   3'- caCGUGg----UUGCGCGCGGCG---------------CAG---UGCU- -5'
22888 3' -58.8 NC_005137.2 + 130989 0.66 0.759899
Target:  5'- uUGCGCCuGACGCGcCGCUGU-UCACu- -3'
miRNA:   3'- cACGUGG-UUGCGC-GCGGCGcAGUGcu -5'
22888 3' -58.8 NC_005137.2 + 18548 0.66 0.750407
Target:  5'- -gGCGCCGuCGCccauccugcCGCCGCGUCcaACGGc -3'
miRNA:   3'- caCGUGGUuGCGc--------GCGGCGCAG--UGCU- -5'
22888 3' -58.8 NC_005137.2 + 59101 0.66 0.750407
Target:  5'- uUGCACCGaaucgcugcucuGCGCGagGCUGgGUgACGAu -3'
miRNA:   3'- cACGUGGU------------UGCGCg-CGGCgCAgUGCU- -5'
22888 3' -58.8 NC_005137.2 + 91717 0.66 0.750407
Target:  5'- -cGCACUuuuuGCGCGCGaCGUGUacgccaGCGAu -3'
miRNA:   3'- caCGUGGu---UGCGCGCgGCGCAg-----UGCU- -5'
22888 3' -58.8 NC_005137.2 + 51702 0.66 0.750407
Target:  5'- -gGCACCGuuGCGCGCGUCggaaGCG-CAUGu -3'
miRNA:   3'- caCGUGGU--UGCGCGCGG----CGCaGUGCu -5'
22888 3' -58.8 NC_005137.2 + 99974 0.66 0.750407
Target:  5'- -cGCGCCucuuCGUGCGCCagcaGCG-CACGc -3'
miRNA:   3'- caCGUGGuu--GCGCGCGG----CGCaGUGCu -5'
22888 3' -58.8 NC_005137.2 + 95478 0.66 0.750407
Target:  5'- -cGUACCGgucggAUGCGCGCCGCacgggCGCa- -3'
miRNA:   3'- caCGUGGU-----UGCGCGCGGCGca---GUGcu -5'
22888 3' -58.8 NC_005137.2 + 98495 0.66 0.750407
Target:  5'- uUGCACCGACGCagaacCGagGCG-CACGAa -3'
miRNA:   3'- cACGUGGUUGCGc----GCggCGCaGUGCU- -5'
22888 3' -58.8 NC_005137.2 + 63115 0.66 0.750407
Target:  5'- uUGCGCUu---CGCGCCG-GUCGCGGc -3'
miRNA:   3'- cACGUGGuugcGCGCGGCgCAGUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.