miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22890 3' -55.7 NC_005137.2 + 60411 0.66 0.894656
Target:  5'- cAGCGCAAcaaaaagccgcCCGCGCAGCaCGaaCGCa- -3'
miRNA:   3'- uUUGCGUU-----------GGCGCGUCG-GCaaGUGgg -5'
22890 3' -55.7 NC_005137.2 + 13158 0.66 0.894656
Target:  5'- cGGACGCGuCCGUGCuGGUgGUU-GCCCc -3'
miRNA:   3'- -UUUGCGUuGGCGCG-UCGgCAAgUGGG- -5'
22890 3' -55.7 NC_005137.2 + 98653 0.66 0.893983
Target:  5'- uGGCGCAcguuaauaugcaaAUCGUGCuuGCCGUUC-UCCg -3'
miRNA:   3'- uUUGCGU-------------UGGCGCGu-CGGCAAGuGGG- -5'
22890 3' -55.7 NC_005137.2 + 41471 0.66 0.887823
Target:  5'- -cGCGCuguCCGCaGCGGaCGUUgACCUa -3'
miRNA:   3'- uuUGCGuu-GGCG-CGUCgGCAAgUGGG- -5'
22890 3' -55.7 NC_005137.2 + 12413 0.66 0.885727
Target:  5'- uGGACGCAGCUaaaguuuuggcaauGCGCAGuCCGUgaucaggCGCUUu -3'
miRNA:   3'- -UUUGCGUUGG--------------CGCGUC-GGCAa------GUGGG- -5'
22890 3' -55.7 NC_005137.2 + 30984 0.66 0.880757
Target:  5'- cGAAUGCcgggucgucccAACCGCGCAcGCUGgucggCGCCg -3'
miRNA:   3'- -UUUGCG-----------UUGGCGCGU-CGGCaa---GUGGg -5'
22890 3' -55.7 NC_005137.2 + 11143 0.66 0.880757
Target:  5'- aAAACGUuuguuGGCUGCGCGuGCCaccaCGCCCg -3'
miRNA:   3'- -UUUGCG-----UUGGCGCGU-CGGcaa-GUGGG- -5'
22890 3' -55.7 NC_005137.2 + 37543 0.66 0.873461
Target:  5'- cGGCGCuGgCGCGCA-CCGU--GCCCg -3'
miRNA:   3'- uUUGCGuUgGCGCGUcGGCAagUGGG- -5'
22890 3' -55.7 NC_005137.2 + 98811 0.66 0.865941
Target:  5'- cAAACGCcGCCGUGC-GCCGacCGCg- -3'
miRNA:   3'- -UUUGCGuUGGCGCGuCGGCaaGUGgg -5'
22890 3' -55.7 NC_005137.2 + 67360 0.66 0.865941
Target:  5'- cGGGCGCGACgcgaUGCGCGaCCGU-CGCCg -3'
miRNA:   3'- -UUUGCGUUG----GCGCGUcGGCAaGUGGg -5'
22890 3' -55.7 NC_005137.2 + 97339 0.66 0.865941
Target:  5'- aAGACGCAA-CGCGCuccaggcucAGCgGUUUGCCg -3'
miRNA:   3'- -UUUGCGUUgGCGCG---------UCGgCAAGUGGg -5'
22890 3' -55.7 NC_005137.2 + 125046 0.66 0.865941
Target:  5'- cAACGgAGCCGgGCGGCgCGg-CGCCg -3'
miRNA:   3'- uUUGCgUUGGCgCGUCG-GCaaGUGGg -5'
22890 3' -55.7 NC_005137.2 + 28050 0.66 0.861324
Target:  5'- uGGCGCGACgCGCGCugggaugcgccagacGGCUGUaCACgCa -3'
miRNA:   3'- uUUGCGUUG-GCGCG---------------UCGGCAaGUGgG- -5'
22890 3' -55.7 NC_005137.2 + 91156 0.66 0.858204
Target:  5'- aGAGCGCaAACCGCGU-GCUcguGUUCACg- -3'
miRNA:   3'- -UUUGCG-UUGGCGCGuCGG---CAAGUGgg -5'
22890 3' -55.7 NC_005137.2 + 83779 0.67 0.850254
Target:  5'- --cCGCAGCgGCGCAGUC-UUCAgCg -3'
miRNA:   3'- uuuGCGUUGgCGCGUCGGcAAGUgGg -5'
22890 3' -55.7 NC_005137.2 + 60971 0.67 0.850254
Target:  5'- gGGGCGCAccacguaCGCGguGCCGUgggaUugCCg -3'
miRNA:   3'- -UUUGCGUug-----GCGCguCGGCAa---GugGG- -5'
22890 3' -55.7 NC_005137.2 + 35519 0.67 0.850254
Target:  5'- cGAUGCGcCCGUGCGGC-GcgCAUCCg -3'
miRNA:   3'- uUUGCGUuGGCGCGUCGgCaaGUGGG- -5'
22890 3' -55.7 NC_005137.2 + 63777 0.67 0.850254
Target:  5'- --cCGUAgaACCGUGCgaaGGUCGcgCGCCCg -3'
miRNA:   3'- uuuGCGU--UGGCGCG---UCGGCaaGUGGG- -5'
22890 3' -55.7 NC_005137.2 + 87319 0.67 0.849448
Target:  5'- gAAGCGCGucgcgaaACgGCGCAGCUGgccaACCg -3'
miRNA:   3'- -UUUGCGU-------UGgCGCGUCGGCaag-UGGg -5'
22890 3' -55.7 NC_005137.2 + 85270 0.67 0.8421
Target:  5'- cGGCGUAACCcuugGCGCGGCU----GCCCg -3'
miRNA:   3'- uUUGCGUUGG----CGCGUCGGcaagUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.