miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22896 5' -52 NC_005137.2 + 79842 0.66 0.981393
Target:  5'- cAGGCACGGugucgcugcacaugcGCAGCAG-CUGUgGCCa -3'
miRNA:   3'- aUUUGUGCC---------------CGUUGUUaGGCAgCGGg -5'
22896 5' -52 NC_005137.2 + 95998 0.66 0.980521
Target:  5'- gUAAAUugaAUcGGCAuGCAggCCGUUGCCCg -3'
miRNA:   3'- -AUUUG---UGcCCGU-UGUuaGGCAGCGGG- -5'
22896 5' -52 NC_005137.2 + 22979 0.66 0.979157
Target:  5'- cUAGACACGGGCGAUggUUC-UauaacuuuuuuuucaCGCCa -3'
miRNA:   3'- -AUUUGUGCCCGUUGuuAGGcA---------------GCGGg -5'
22896 5' -52 NC_005137.2 + 100264 0.66 0.975699
Target:  5'- --cGCACGGGCG-CGcGUCgCGgcauucaCGCCCa -3'
miRNA:   3'- auuUGUGCCCGUuGU-UAG-GCa------GCGGG- -5'
22896 5' -52 NC_005137.2 + 49614 0.66 0.975699
Target:  5'- -cAGCACGuacGGaauGCGGUcgCCGUUGCCCg -3'
miRNA:   3'- auUUGUGC---CCgu-UGUUA--GGCAGCGGG- -5'
22896 5' -52 NC_005137.2 + 128571 0.66 0.975699
Target:  5'- cGGGCGCGGGCA------CGUCGgCCa -3'
miRNA:   3'- aUUUGUGCCCGUuguuagGCAGCgGG- -5'
22896 5' -52 NC_005137.2 + 68428 0.66 0.972985
Target:  5'- --cGCACGGGUugAACGAgUCGgcgcaGCCCa -3'
miRNA:   3'- auuUGUGCCCG--UUGUUaGGCag---CGGG- -5'
22896 5' -52 NC_005137.2 + 54652 0.66 0.972985
Target:  5'- ---uCGCGGcGCAAUAAUaaacaGUCGCUCg -3'
miRNA:   3'- auuuGUGCC-CGUUGUUAgg---CAGCGGG- -5'
22896 5' -52 NC_005137.2 + 53791 0.66 0.970057
Target:  5'- ----aACGGGCGACGAguugCCGaaaUCaCCCa -3'
miRNA:   3'- auuugUGCCCGUUGUUa---GGC---AGcGGG- -5'
22896 5' -52 NC_005137.2 + 97988 0.67 0.96691
Target:  5'- cGGGCGCGcGGCGugGGUgCGccCGCCa -3'
miRNA:   3'- aUUUGUGC-CCGUugUUAgGCa-GCGGg -5'
22896 5' -52 NC_005137.2 + 52757 0.67 0.96691
Target:  5'- aUAGACACGGGCAAuCGGUU--UUGCUa -3'
miRNA:   3'- -AUUUGUGCCCGUU-GUUAGgcAGCGGg -5'
22896 5' -52 NC_005137.2 + 11206 0.67 0.96691
Target:  5'- ----aAUGGGCGccGCuccggCCGUCGCCg -3'
miRNA:   3'- auuugUGCCCGU--UGuua--GGCAGCGGg -5'
22896 5' -52 NC_005137.2 + 65713 0.67 0.964913
Target:  5'- aGGAUugGGGCcugggucggguacccAAUggUcaCCGUCGCCg -3'
miRNA:   3'- aUUUGugCCCG---------------UUGuuA--GGCAGCGGg -5'
22896 5' -52 NC_005137.2 + 93461 0.67 0.963536
Target:  5'- --cAUACGGGC-ACGGUgCG-CGCCa -3'
miRNA:   3'- auuUGUGCCCGuUGUUAgGCaGCGGg -5'
22896 5' -52 NC_005137.2 + 6781 0.67 0.963536
Target:  5'- --uGCGUGGGUucgucaAGUCCGUUGCCUg -3'
miRNA:   3'- auuUGUGCCCGuug---UUAGGCAGCGGG- -5'
22896 5' -52 NC_005137.2 + 86701 0.67 0.959929
Target:  5'- cUAAACGCGGGCGACGAagaCUua-GCCa -3'
miRNA:   3'- -AUUUGUGCCCGUUGUUa--GGcagCGGg -5'
22896 5' -52 NC_005137.2 + 65583 0.67 0.959929
Target:  5'- --uACACGGGCAACGgcAUUgGgugcCGCuCCg -3'
miRNA:   3'- auuUGUGCCCGUUGU--UAGgCa---GCG-GG- -5'
22896 5' -52 NC_005137.2 + 106699 0.67 0.951993
Target:  5'- cGGACGCGGuggacuGCAACAAgCCGUCuGUCa -3'
miRNA:   3'- aUUUGUGCC------CGUUGUUaGGCAG-CGGg -5'
22896 5' -52 NC_005137.2 + 43723 0.67 0.951993
Target:  5'- uUAAACGCGGuCAGCAAUCCuUUGUUa -3'
miRNA:   3'- -AUUUGUGCCcGUUGUUAGGcAGCGGg -5'
22896 5' -52 NC_005137.2 + 12057 0.67 0.951993
Target:  5'- -uGAUACGccagucGGuCGGCAAUCaCGUCGCCg -3'
miRNA:   3'- auUUGUGC------CC-GUUGUUAG-GCAGCGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.