miRNA display CGI


Results 1 - 20 of 124 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22898 5' -54.8 NC_005137.2 + 68994 0.66 0.920789
Target:  5'- cAAAACCUGCaGCuuGGCaGCGACGCcauucuGGCGc -3'
miRNA:   3'- -UUUUGGGCG-CGu-UUG-CGUUGCG------CCGC- -5'
22898 5' -54.8 NC_005137.2 + 34667 0.66 0.920789
Target:  5'- -cGACCCGCcaccgcaccaGCAAGCGC--CGUGGgGu -3'
miRNA:   3'- uuUUGGGCG----------CGUUUGCGuuGCGCCgC- -5'
22898 5' -54.8 NC_005137.2 + 96433 0.66 0.920789
Target:  5'- --cGCCCGcCGCGuuGCGUuuGCGCGGg- -3'
miRNA:   3'- uuuUGGGC-GCGUu-UGCGu-UGCGCCgc -5'
22898 5' -54.8 NC_005137.2 + 53040 0.66 0.920789
Target:  5'- cGAAACUCG-GCAAACaccgugaauaaGguGCGCGGUGu -3'
miRNA:   3'- -UUUUGGGCgCGUUUG-----------CguUGCGCCGC- -5'
22898 5' -54.8 NC_005137.2 + 31199 0.66 0.919058
Target:  5'- -cGGCCCGCGUcgcccuuguaccaGCGGuCGCGGCa -3'
miRNA:   3'- uuUUGGGCGCGuuug---------CGUU-GCGCCGc -5'
22898 5' -54.8 NC_005137.2 + 125751 0.66 0.91493
Target:  5'- -cGGCuuGCGCc-GCGCGuuucgaGCGGCGc -3'
miRNA:   3'- uuUUGggCGCGuuUGCGUug----CGCCGC- -5'
22898 5' -54.8 NC_005137.2 + 30929 0.66 0.91493
Target:  5'- uAAGCaCGUGC--GCGCGcCGCGGCa -3'
miRNA:   3'- uUUUGgGCGCGuuUGCGUuGCGCCGc -5'
22898 5' -54.8 NC_005137.2 + 73801 0.66 0.91493
Target:  5'- -cGGCCUGCuGCAgguuggccaaaAACGCGuCGCGGUc -3'
miRNA:   3'- uuUUGGGCG-CGU-----------UUGCGUuGCGCCGc -5'
22898 5' -54.8 NC_005137.2 + 110665 0.66 0.91493
Target:  5'- --uGCCCGUGaCGGGCGU-GCGCGGa- -3'
miRNA:   3'- uuuUGGGCGC-GUUUGCGuUGCGCCgc -5'
22898 5' -54.8 NC_005137.2 + 66682 0.66 0.912516
Target:  5'- -uGGCCUGUGCccucgggcaaauuGGCGCAGCGC-GCGu -3'
miRNA:   3'- uuUUGGGCGCGu------------UUGCGUUGCGcCGC- -5'
22898 5' -54.8 NC_005137.2 + 20276 0.66 0.908821
Target:  5'- --cGCCCgGCGCAcaAGCGCucUGCGcGCa -3'
miRNA:   3'- uuuUGGG-CGCGU--UUGCGuuGCGC-CGc -5'
22898 5' -54.8 NC_005137.2 + 84554 0.66 0.908821
Target:  5'- uGAugCUGUGCAAcACGuCGGCGCguucgGGCGg -3'
miRNA:   3'- uUUugGGCGCGUU-UGC-GUUGCG-----CCGC- -5'
22898 5' -54.8 NC_005137.2 + 42469 0.66 0.904397
Target:  5'- -cAGCCUGUacaacaaacucaauuGgGAACGCAcacggcgcuugcuGCGCGGCGa -3'
miRNA:   3'- uuUUGGGCG---------------CgUUUGCGU-------------UGCGCCGC- -5'
22898 5' -54.8 NC_005137.2 + 43657 0.66 0.902463
Target:  5'- ---uCCUGCGCAAugucCGCcAUGCGGUu -3'
miRNA:   3'- uuuuGGGCGCGUUu---GCGuUGCGCCGc -5'
22898 5' -54.8 NC_005137.2 + 68798 0.66 0.902463
Target:  5'- cGGugCCGCGCGAaaGCGUAgaGCGCGa-- -3'
miRNA:   3'- uUUugGGCGCGUU--UGCGU--UGCGCcgc -5'
22898 5' -54.8 NC_005137.2 + 11774 0.66 0.902463
Target:  5'- aAAGGCUggaagUGCGCAGuCGCAAgGCGGgGc -3'
miRNA:   3'- -UUUUGG-----GCGCGUUuGCGUUgCGCCgC- -5'
22898 5' -54.8 NC_005137.2 + 42733 0.66 0.901814
Target:  5'- cGGACgCGUGCGcguuuucugcaaaAACGaCAGCGUGGCu -3'
miRNA:   3'- uUUUGgGCGCGU-------------UUGC-GUUGCGCCGc -5'
22898 5' -54.8 NC_005137.2 + 6020 0.66 0.89586
Target:  5'- ---uCCCGCcCGAuuuccaACGCAGCGCaGCGc -3'
miRNA:   3'- uuuuGGGCGcGUU------UGCGUUGCGcCGC- -5'
22898 5' -54.8 NC_005137.2 + 51253 0.66 0.89586
Target:  5'- --cGCCaaCGCcAACGCuAACGCGGCc -3'
miRNA:   3'- uuuUGGgcGCGuUUGCG-UUGCGCCGc -5'
22898 5' -54.8 NC_005137.2 + 41152 0.66 0.89586
Target:  5'- aGAGACUUuggGCGCAGACgGCggUGUGGUa -3'
miRNA:   3'- -UUUUGGG---CGCGUUUG-CGuuGCGCCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.