miRNA display CGI


Results 1 - 20 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22904 3' -52.6 NC_005137.2 + 31214 0.65 0.979923
Target:  5'- cGCGGCGAccUCGuGUaCAgauugauauaaagcGCUCGCGCgGCCa -3'
miRNA:   3'- -CGUUGCUa-AGC-CG-GU--------------UGAGCGUG-CGG- -5'
22904 3' -52.6 NC_005137.2 + 103606 0.66 0.978312
Target:  5'- uGCAGCGGccgcuacuUUUGGCCGGacggCGUGCGUUu -3'
miRNA:   3'- -CGUUGCU--------AAGCCGGUUga--GCGUGCGG- -5'
22904 3' -52.6 NC_005137.2 + 6995 0.66 0.978312
Target:  5'- -gGACGAgcggUCgccgGGCaCAACguggCGCACGCg -3'
miRNA:   3'- cgUUGCUa---AG----CCG-GUUGa---GCGUGCGg -5'
22904 3' -52.6 NC_005137.2 + 41106 0.66 0.978312
Target:  5'- uCAAgGAaaUUUGGCCGACgUGCACGaCg -3'
miRNA:   3'- cGUUgCU--AAGCCGGUUGaGCGUGCgG- -5'
22904 3' -52.6 NC_005137.2 + 54480 0.66 0.978312
Target:  5'- uUAGCGucaaaCuGCCGACggaagUGCACGCCg -3'
miRNA:   3'- cGUUGCuaa--GcCGGUUGa----GCGUGCGG- -5'
22904 3' -52.6 NC_005137.2 + 1578 0.66 0.977594
Target:  5'- uCAAUGccUUGGCCAAauuuaccgacccguCggCGCACGCCu -3'
miRNA:   3'- cGUUGCuaAGCCGGUU--------------Ga-GCGUGCGG- -5'
22904 3' -52.6 NC_005137.2 + 112529 0.66 0.975849
Target:  5'- -uGACG--UCGGCaCAGCcgCGCACuauGCCa -3'
miRNA:   3'- cgUUGCuaAGCCG-GUUGa-GCGUG---CGG- -5'
22904 3' -52.6 NC_005137.2 + 12954 0.66 0.975849
Target:  5'- cGCuGCGGcgCGGCCAcaaACgguugGCACGCa -3'
miRNA:   3'- -CGuUGCUaaGCCGGU---UGag---CGUGCGg -5'
22904 3' -52.6 NC_005137.2 + 28492 0.66 0.975849
Target:  5'- uGCAAUGAcacgUUCaaguGGcCCAACUUGaCGCGCg -3'
miRNA:   3'- -CGUUGCU----AAG----CC-GGUUGAGC-GUGCGg -5'
22904 3' -52.6 NC_005137.2 + 87219 0.66 0.975592
Target:  5'- -aAACGAUgaaaaccagCGGCUAACgacagcaUUGCAgGCCg -3'
miRNA:   3'- cgUUGCUAa--------GCCGGUUG-------AGCGUgCGG- -5'
22904 3' -52.6 NC_005137.2 + 12506 0.66 0.974808
Target:  5'- -uGACGAUggaCGGUCGGuCUacggcgcacaugaGCACGCCa -3'
miRNA:   3'- cgUUGCUAa--GCCGGUU-GAg------------CGUGCGG- -5'
22904 3' -52.6 NC_005137.2 + 56492 0.66 0.973187
Target:  5'- uGCAACGcgUCGuGUCGcguguacgGCguuaCGUugGCCg -3'
miRNA:   3'- -CGUUGCuaAGC-CGGU--------UGa---GCGugCGG- -5'
22904 3' -52.6 NC_005137.2 + 1673 0.66 0.973187
Target:  5'- gGUuuCGGcgCGGUCAGCaaCGCGCGCa -3'
miRNA:   3'- -CGuuGCUaaGCCGGUUGa-GCGUGCGg -5'
22904 3' -52.6 NC_005137.2 + 125120 0.66 0.970319
Target:  5'- aGCGGCGGgcCGcGCCG-CUCGaACGUCu -3'
miRNA:   3'- -CGUUGCUaaGC-CGGUuGAGCgUGCGG- -5'
22904 3' -52.6 NC_005137.2 + 83538 0.66 0.970319
Target:  5'- uGCAAgGGggcucauggCGGCCAACgagCGCaauaACGCg -3'
miRNA:   3'- -CGUUgCUaa-------GCCGGUUGa--GCG----UGCGg -5'
22904 3' -52.6 NC_005137.2 + 74488 0.66 0.970319
Target:  5'- aCGGCGcguuugCGGCCAACgua-ACGCCg -3'
miRNA:   3'- cGUUGCuaa---GCCGGUUGagcgUGCGG- -5'
22904 3' -52.6 NC_005137.2 + 71066 0.66 0.970319
Target:  5'- uCAACGAggCGcGCCAGCUCa-GCGUa -3'
miRNA:   3'- cGUUGCUaaGC-CGGUUGAGcgUGCGg -5'
22904 3' -52.6 NC_005137.2 + 64539 0.66 0.967237
Target:  5'- gGCAACG--UUGaCCAACgugCGCACGUUa -3'
miRNA:   3'- -CGUUGCuaAGCcGGUUGa--GCGUGCGG- -5'
22904 3' -52.6 NC_005137.2 + 11301 0.66 0.967237
Target:  5'- cGCGGCGGgaugCGuacgugcuaaGCUGugUgCGCGCGCCg -3'
miRNA:   3'- -CGUUGCUaa--GC----------CGGUugA-GCGUGCGG- -5'
22904 3' -52.6 NC_005137.2 + 75127 0.67 0.963936
Target:  5'- uCGGCGucgUCGGCgCGAUugUUGgACGCCa -3'
miRNA:   3'- cGUUGCua-AGCCG-GUUG--AGCgUGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.