miRNA display CGI


Results 1 - 20 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22905 5' -53.3 NC_005137.2 + 129846 0.66 0.96674
Target:  5'- uUACCGau--GGAGCuccaaaACGGGCGCGa -3'
miRNA:   3'- cGUGGUgcauUUUCGug----UGCCCGCGC- -5'
22905 5' -53.3 NC_005137.2 + 96356 0.66 0.96674
Target:  5'- gGCGggUCGgGUAAucgcucGCACACGGcGCGCa -3'
miRNA:   3'- -CGU--GGUgCAUUuu----CGUGUGCC-CGCGc -5'
22905 5' -53.3 NC_005137.2 + 5250 0.66 0.96674
Target:  5'- cGCGCCGCucGAAA-CGCGCGG-CGCa -3'
miRNA:   3'- -CGUGGUGcaUUUUcGUGUGCCcGCGc -5'
22905 5' -53.3 NC_005137.2 + 102909 0.66 0.96674
Target:  5'- aCACgGCGUAcGAGGCcgucaugaACAUGGGCgGCa -3'
miRNA:   3'- cGUGgUGCAU-UUUCG--------UGUGCCCG-CGc -5'
22905 5' -53.3 NC_005137.2 + 63916 0.66 0.96674
Target:  5'- -uGCUugGcGGAcgguucGCACGCGGuGCGCGa -3'
miRNA:   3'- cgUGGugCaUUUu-----CGUGUGCC-CGCGC- -5'
22905 5' -53.3 NC_005137.2 + 65557 0.66 0.965761
Target:  5'- uGCAUUACGUGuuaaacgcguauguGUACACGGGCa-- -3'
miRNA:   3'- -CGUGGUGCAUuuu-----------CGUGUGCCCGcgc -5'
22905 5' -53.3 NC_005137.2 + 46664 0.66 0.963745
Target:  5'- aGCGCCGCuuuaaucGAAAGCACGCGccaguaugcucgcacGCGCGc -3'
miRNA:   3'- -CGUGGUGca-----UUUUCGUGUGCc--------------CGCGC- -5'
22905 5' -53.3 NC_005137.2 + 35407 0.66 0.963401
Target:  5'- aGCACguCGCGcac-AGUGCGCGGGCgGCa -3'
miRNA:   3'- -CGUG--GUGCauuuUCGUGUGCCCG-CGc -5'
22905 5' -53.3 NC_005137.2 + 110433 0.66 0.963401
Target:  5'- gGCGCgACgGUGAGcguGCACACcgcggccGGCGCGu -3'
miRNA:   3'- -CGUGgUG-CAUUUu--CGUGUGc------CCGCGC- -5'
22905 5' -53.3 NC_005137.2 + 73760 0.66 0.963401
Target:  5'- -aAUCACGUcAucGUuugGCGCGGGCGUa -3'
miRNA:   3'- cgUGGUGCAuUuuCG---UGUGCCCGCGc -5'
22905 5' -53.3 NC_005137.2 + 612 0.66 0.963401
Target:  5'- uCACCGCGaagguccGAAGGCGguucCACGGGuUGCGc -3'
miRNA:   3'- cGUGGUGCa------UUUUCGU----GUGCCC-GCGC- -5'
22905 5' -53.3 NC_005137.2 + 3462 0.66 0.963401
Target:  5'- aGUAUUAgGUGAuucaAGGUcaucagGCAUGGGCGCGc -3'
miRNA:   3'- -CGUGGUgCAUU----UUCG------UGUGCCCGCGC- -5'
22905 5' -53.3 NC_005137.2 + 6986 0.66 0.959836
Target:  5'- uGCGCaCACGgacGAGcggucgccgGGCACaACGuGGCGCa -3'
miRNA:   3'- -CGUG-GUGCa--UUU---------UCGUG-UGC-CCGCGc -5'
22905 5' -53.3 NC_005137.2 + 70234 0.66 0.959836
Target:  5'- cGCACaaagGCG-AAAcGCGCACGGGC-Ca -3'
miRNA:   3'- -CGUGg---UGCaUUUuCGUGUGCCCGcGc -5'
22905 5' -53.3 NC_005137.2 + 80156 0.66 0.959836
Target:  5'- aGCACCACGUuuuuuCAC-CuGGCGCu -3'
miRNA:   3'- -CGUGGUGCAuuuucGUGuGcCCGCGc -5'
22905 5' -53.3 NC_005137.2 + 22825 0.66 0.959836
Target:  5'- cUugCGCGUugccAAAcGCGaggGCGGGCGCGc -3'
miRNA:   3'- cGugGUGCA----UUUuCGUg--UGCCCGCGC- -5'
22905 5' -53.3 NC_005137.2 + 8500 0.66 0.956038
Target:  5'- cUugCACGUGAaaAAGaCGCGCGGcGaCGCa -3'
miRNA:   3'- cGugGUGCAUU--UUC-GUGUGCC-C-GCGc -5'
22905 5' -53.3 NC_005137.2 + 1995 0.66 0.955251
Target:  5'- -uGCCGCGUGcacagcucguGCACGCuGcGGCGCa -3'
miRNA:   3'- cgUGGUGCAUuuu-------CGUGUG-C-CCGCGc -5'
22905 5' -53.3 NC_005137.2 + 2041 0.66 0.952418
Target:  5'- cGCGCCuuauuugcucacgguCGUAGucGUGauuugaaacgauCACGGGCGCGu -3'
miRNA:   3'- -CGUGGu--------------GCAUUuuCGU------------GUGCCCGCGC- -5'
22905 5' -53.3 NC_005137.2 + 96474 0.66 0.952004
Target:  5'- -gACCGCGaac--GCaACACGGuGCGCGu -3'
miRNA:   3'- cgUGGUGCauuuuCG-UGUGCC-CGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.