miRNA display CGI


Results 1 - 20 of 60 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22910 3' -61.4 NC_005137.2 + 39756 0.66 0.624427
Target:  5'- uGCACGaCGUCCGUCAuauuccCCGgCACgUGGCa -3'
miRNA:   3'- -UGUGCaGCGGGCAGUc-----GGC-GUG-GCCG- -5'
22910 3' -61.4 NC_005137.2 + 114808 0.68 0.536342
Target:  5'- cGCACGUCGUcgUCGUCAGauGUcauaggcgGCUGGCg -3'
miRNA:   3'- -UGUGCAGCG--GGCAGUCggCG--------UGGCCG- -5'
22910 3' -61.4 NC_005137.2 + 123047 0.68 0.545964
Target:  5'- aACACGggcCGCCgGUCgaGGUCGCGgCGcGCa -3'
miRNA:   3'- -UGUGCa--GCGGgCAG--UCGGCGUgGC-CG- -5'
22910 3' -61.4 NC_005137.2 + 124980 0.68 0.559525
Target:  5'- gGCGCuG-CGCUgCGUUGgaaaucgggcgggauGCCGCACCGGCg -3'
miRNA:   3'- -UGUG-CaGCGG-GCAGU---------------CGGCGUGGCCG- -5'
22910 3' -61.4 NC_005137.2 + 20903 0.67 0.565366
Target:  5'- gGCACGUUGaUCGUUA-CCGCAuCUGGCg -3'
miRNA:   3'- -UGUGCAGCgGGCAGUcGGCGU-GGCCG- -5'
22910 3' -61.4 NC_005137.2 + 31203 0.67 0.594781
Target:  5'- cCGCGUCGCCCuuGUacCAGCgGUcgCGGCa -3'
miRNA:   3'- uGUGCAGCGGG--CA--GUCGgCGugGCCG- -5'
22910 3' -61.4 NC_005137.2 + 22368 0.67 0.61453
Target:  5'- uGCACGUCGgCaggCgAGCacuuuaacccuaCGCACCGGCa -3'
miRNA:   3'- -UGUGCAGCgGgcaG-UCG------------GCGUGGCCG- -5'
22910 3' -61.4 NC_005137.2 + 47713 0.67 0.61453
Target:  5'- aGCGgGUCGCCCuGUUuGaCCGCGCUGuuuGCa -3'
miRNA:   3'- -UGUgCAGCGGG-CAGuC-GGCGUGGC---CG- -5'
22910 3' -61.4 NC_005137.2 + 122501 0.66 0.623437
Target:  5'- -uGCGUCGCCgcgCGUCuuuuucacgugcaAGCCuGCAUCGGg -3'
miRNA:   3'- ugUGCAGCGG---GCAG-------------UCGG-CGUGGCCg -5'
22910 3' -61.4 NC_005137.2 + 114167 0.68 0.52678
Target:  5'- aACACGUa-UCgGUUAGugaacCCGCACCGGCu -3'
miRNA:   3'- -UGUGCAgcGGgCAGUC-----GGCGUGGCCG- -5'
22910 3' -61.4 NC_005137.2 + 100140 0.69 0.4985
Target:  5'- gGCACaGcUCGCCCacGUaCGGgCGCGCCGGg -3'
miRNA:   3'- -UGUG-C-AGCGGG--CA-GUCgGCGUGGCCg -5'
22910 3' -61.4 NC_005137.2 + 98341 0.69 0.480028
Target:  5'- uCAUGUCGUacgucaCCGUCAcGCUuguGCGCCGGUu -3'
miRNA:   3'- uGUGCAGCG------GGCAGU-CGG---CGUGGCCG- -5'
22910 3' -61.4 NC_005137.2 + 37667 0.74 0.230395
Target:  5'- aACGCGUCGCCgGUCAGCacgaugcuaGCGCuCaGCg -3'
miRNA:   3'- -UGUGCAGCGGgCAGUCGg--------CGUG-GcCG- -5'
22910 3' -61.4 NC_005137.2 + 31958 0.73 0.27107
Target:  5'- aGCACGuUCGCCaaacugCAGCCGUacacuauaaauuACCGGCg -3'
miRNA:   3'- -UGUGC-AGCGGgca---GUCGGCG------------UGGCCG- -5'
22910 3' -61.4 NC_005137.2 + 18243 0.72 0.338893
Target:  5'- uGCGCGUCGUUCGUacuGCgGCGCCGcGUc -3'
miRNA:   3'- -UGUGCAGCGGGCAgu-CGgCGUGGC-CG- -5'
22910 3' -61.4 NC_005137.2 + 27391 0.71 0.346315
Target:  5'- cGCACGcCGUCCGgccaaaaguagCGGCCGCugCaGCg -3'
miRNA:   3'- -UGUGCaGCGGGCa----------GUCGGCGugGcCG- -5'
22910 3' -61.4 NC_005137.2 + 55358 0.7 0.435394
Target:  5'- uGCACGU-GCCCcUUGGCCaCGCUGGCc -3'
miRNA:   3'- -UGUGCAgCGGGcAGUCGGcGUGGCCG- -5'
22910 3' -61.4 NC_005137.2 + 85253 0.69 0.452967
Target:  5'- -gGCGUCGCUguCGUCAGCgGCguaACCcuuGGCg -3'
miRNA:   3'- ugUGCAGCGG--GCAGUCGgCG---UGG---CCG- -5'
22910 3' -61.4 NC_005137.2 + 123174 0.69 0.452967
Target:  5'- uUAUuUUGCCUGUUuGCCGC-CCGGCa -3'
miRNA:   3'- uGUGcAGCGGGCAGuCGGCGuGGCCG- -5'
22910 3' -61.4 NC_005137.2 + 35549 0.69 0.461896
Target:  5'- aACACGgCGCuuGUCaAGacaCGCaccGCCGGCg -3'
miRNA:   3'- -UGUGCaGCGggCAG-UCg--GCG---UGGCCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.