miRNA display CGI


Results 41 - 60 of 137 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22911 3' -49.8 NC_005137.2 + 63012 0.68 0.981904
Target:  5'- aGCGuAUUGCucGCGCGUggccaaCGAcGACGUGCg -3'
miRNA:   3'- -CGU-UAACGc-UGCGCG------GCUaUUGCACG- -5'
22911 3' -49.8 NC_005137.2 + 102745 0.66 0.994554
Target:  5'- aGCAcgUa-GACGaCG-CGGUGGCGUGCg -3'
miRNA:   3'- -CGUuaAcgCUGC-GCgGCUAUUGCACG- -5'
22911 3' -49.8 NC_005137.2 + 44007 0.66 0.997138
Target:  5'- cGCGAUccGCGGCGUuUCGc--ACGUGCa -3'
miRNA:   3'- -CGUUAa-CGCUGCGcGGCuauUGCACG- -5'
22911 3' -49.8 NC_005137.2 + 99987 0.68 0.981904
Target:  5'- aGCAucagccCGACguagcgGCGCCGAccAGCGUGCg -3'
miRNA:   3'- -CGUuaac--GCUG------CGCGGCUa-UUGCACG- -5'
22911 3' -49.8 NC_005137.2 + 74281 0.66 0.997138
Target:  5'- uGCAAccGUGcCGUGCCGGcGcgaaagccaacACGUGCa -3'
miRNA:   3'- -CGUUaaCGCuGCGCGGCUaU-----------UGCACG- -5'
22911 3' -49.8 NC_005137.2 + 31079 0.71 0.940976
Target:  5'- uGCG--UGCG-CGuCGCCGAUGauGCGUGg -3'
miRNA:   3'- -CGUuaACGCuGC-GCGGCUAU--UGCACg -5'
22911 3' -49.8 NC_005137.2 + 81424 0.66 0.997089
Target:  5'- aGCu-UUGauGCGCaGCCcagcacuGAUAACGUGCa -3'
miRNA:   3'- -CGuuAACgcUGCG-CGG-------CUAUUGCACG- -5'
22911 3' -49.8 NC_005137.2 + 91234 0.7 0.949744
Target:  5'- aGCAGUgUGCcACGUGCCGggGAauaugacggacguCGUGCa -3'
miRNA:   3'- -CGUUA-ACGcUGCGCGGCuaUU-------------GCACG- -5'
22911 3' -49.8 NC_005137.2 + 30931 0.7 0.958374
Target:  5'- aGCAcgUGCG-CGCGCCGcgGcacaaaGCaUGCu -3'
miRNA:   3'- -CGUuaACGCuGCGCGGCuaU------UGcACG- -5'
22911 3' -49.8 NC_005137.2 + 35517 0.69 0.968217
Target:  5'- aGCGAUgcgcccgUGCGGCGCGCauccgacCGGU-ACGUuGCa -3'
miRNA:   3'- -CGUUA-------ACGCUGCGCG-------GCUAuUGCA-CG- -5'
22911 3' -49.8 NC_005137.2 + 61096 0.69 0.971882
Target:  5'- aCGGUUGCGugGCGCau-UGGCG-GUc -3'
miRNA:   3'- cGUUAACGCugCGCGgcuAUUGCaCG- -5'
22911 3' -49.8 NC_005137.2 + 15259 0.69 0.977298
Target:  5'- -----cGCGGCGCGCaCGuu-GCGUuGCa -3'
miRNA:   3'- cguuaaCGCUGCGCG-GCuauUGCA-CG- -5'
22911 3' -49.8 NC_005137.2 + 30974 0.68 0.981904
Target:  5'- -----cGCGcCGCGUCGGaccGCGUGCu -3'
miRNA:   3'- cguuaaCGCuGCGCGGCUau-UGCACG- -5'
22911 3' -49.8 NC_005137.2 + 118935 0.68 0.983925
Target:  5'- uGCGGUcgGCGACGUgauuGCCGAccgacUGGCGUa- -3'
miRNA:   3'- -CGUUAa-CGCUGCG----CGGCU-----AUUGCAcg -5'
22911 3' -49.8 NC_005137.2 + 97074 0.68 0.987288
Target:  5'- aUAcgUGCG-CGCGaaugccggcaaacCCGAcAACGUGCg -3'
miRNA:   3'- cGUuaACGCuGCGC-------------GGCUaUUGCACG- -5'
22911 3' -49.8 NC_005137.2 + 40254 0.67 0.990345
Target:  5'- uGCAuuggccgUGUGGCGCGCa---AACGUGUu -3'
miRNA:   3'- -CGUua-----ACGCUGCGCGgcuaUUGCACG- -5'
22911 3' -49.8 NC_005137.2 + 15856 0.66 0.994554
Target:  5'- aGCAAguuaaaCGACagugcCGCCGGUcACGUGCc -3'
miRNA:   3'- -CGUUaac---GCUGc----GCGGCUAuUGCACG- -5'
22911 3' -49.8 NC_005137.2 + 56889 0.66 0.995331
Target:  5'- cCAAUUGCGuuuCGCGCaUGAUAAgagGCg -3'
miRNA:   3'- cGUUAACGCu--GCGCG-GCUAUUgcaCG- -5'
22911 3' -49.8 NC_005137.2 + 46881 0.66 0.99595
Target:  5'- gGCuggugGUGGCGCGCguggaaacgguguCGAUGuccguugcgcGCGUGCg -3'
miRNA:   3'- -CGuuaa-CGCUGCGCG-------------GCUAU----------UGCACG- -5'
22911 3' -49.8 NC_005137.2 + 26795 0.66 0.996015
Target:  5'- cGCGc-UGCGACGCGCaCGcuuguACGaGCg -3'
miRNA:   3'- -CGUuaACGCUGCGCG-GCuau--UGCaCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.