miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22917 3' -46.3 NC_005137.2 + 94534 0.66 0.999907
Target:  5'- -gGUUggGgcGCACCGAGucaaugaccaccucGGCcGCGCu -3'
miRNA:   3'- caUAGuuUaaCGUGGCUU--------------CCGuUGCG- -5'
22917 3' -46.3 NC_005137.2 + 56568 0.66 0.999887
Target:  5'- ---cCAAuuuUUGCGCCGuuauGGGaccCGACGCg -3'
miRNA:   3'- cauaGUUu--AACGUGGCu---UCC---GUUGCG- -5'
22917 3' -46.3 NC_005137.2 + 116544 0.66 0.999887
Target:  5'- aGUAUUugaacUGguCCGAAGaCAGCGCa -3'
miRNA:   3'- -CAUAGuuua-ACguGGCUUCcGUUGCG- -5'
22917 3' -46.3 NC_005137.2 + 110696 0.66 0.999887
Target:  5'- aGUAUCGGGUcaUGCGCgCGugcGCAACGg -3'
miRNA:   3'- -CAUAGUUUA--ACGUG-GCuucCGUUGCg -5'
22917 3' -46.3 NC_005137.2 + 64325 0.66 0.999887
Target:  5'- ---cCAAuUUGC-CCGAGGGCAcAgGCc -3'
miRNA:   3'- cauaGUUuAACGuGGCUUCCGU-UgCG- -5'
22917 3' -46.3 NC_005137.2 + 27472 0.66 0.999887
Target:  5'- cGUcgCGAcgUGCGCCGccAGuCAAUGCu -3'
miRNA:   3'- -CAuaGUUuaACGUGGCu-UCcGUUGCG- -5'
22917 3' -46.3 NC_005137.2 + 33121 0.66 0.999887
Target:  5'- -gGUCA----GCGCCGGGuGGCAgcacauuugGCGCa -3'
miRNA:   3'- caUAGUuuaaCGUGGCUU-CCGU---------UGCG- -5'
22917 3' -46.3 NC_005137.2 + 63191 0.66 0.999866
Target:  5'- uUGUCA---UGCAacgccuccaauucguCUGAAGGCAuuauGCGCa -3'
miRNA:   3'- cAUAGUuuaACGU---------------GGCUUCCGU----UGCG- -5'
22917 3' -46.3 NC_005137.2 + 77236 0.66 0.999851
Target:  5'- -cGUCAAGaaaugcccuUUGC-CCGugcgcgauuGGCAACGCu -3'
miRNA:   3'- caUAGUUU---------AACGuGGCuu-------CCGUUGCG- -5'
22917 3' -46.3 NC_005137.2 + 119548 0.66 0.999807
Target:  5'- cGUGUCGAGUgcguuuaGCcUCGGuAGaGCGACGCa -3'
miRNA:   3'- -CAUAGUUUAa------CGuGGCU-UC-CGUUGCG- -5'
22917 3' -46.3 NC_005137.2 + 38079 0.66 0.999807
Target:  5'- aGUGUCAcuGAccGcCACgGAcaagcccacGGGCAACGCg -3'
miRNA:   3'- -CAUAGU--UUaaC-GUGgCU---------UCCGUUGCG- -5'
22917 3' -46.3 NC_005137.2 + 92754 0.66 0.999807
Target:  5'- -aAUCAuguGUUGCAaaaaCGuguAAGGCAAUGUg -3'
miRNA:   3'- caUAGUu--UAACGUg---GC---UUCCGUUGCG- -5'
22917 3' -46.3 NC_005137.2 + 115225 0.66 0.999801
Target:  5'- uUGUUAAGUUGCGuuuuggugggaggUCGAcgaacacauGGCGACGCu -3'
miRNA:   3'- cAUAGUUUAACGU-------------GGCUu--------CCGUUGCG- -5'
22917 3' -46.3 NC_005137.2 + 38971 0.66 0.99975
Target:  5'- -gAUCGcGUUGCccgugcucaaauACCGuguGGGCAGCGa -3'
miRNA:   3'- caUAGUuUAACG------------UGGCu--UCCGUUGCg -5'
22917 3' -46.3 NC_005137.2 + 63471 0.66 0.99975
Target:  5'- -cGUCugacAUUGUAgUGAGGGC-GCGCg -3'
miRNA:   3'- caUAGuu--UAACGUgGCUUCCGuUGCG- -5'
22917 3' -46.3 NC_005137.2 + 31375 0.66 0.99975
Target:  5'- --uUCAAGcuggUGUGCgCGAccgcugguacaaGGGCGACGCg -3'
miRNA:   3'- cauAGUUUa---ACGUG-GCU------------UCCGUUGCG- -5'
22917 3' -46.3 NC_005137.2 + 88390 0.66 0.99975
Target:  5'- cUAUCAcGUUGCG----AGGCAGCGUg -3'
miRNA:   3'- cAUAGUuUAACGUggcuUCCGUUGCG- -5'
22917 3' -46.3 NC_005137.2 + 95592 0.67 0.99971
Target:  5'- aUGUUAAGUUGCGucacuaguCCGGgucgcaaacaacugcAGaGCAGCGCa -3'
miRNA:   3'- cAUAGUUUAACGU--------GGCU---------------UC-CGUUGCG- -5'
22917 3' -46.3 NC_005137.2 + 45659 0.67 0.99968
Target:  5'- -gAUCAAcgUGUACaccaacgugGgcGGCGGCGCc -3'
miRNA:   3'- caUAGUUuaACGUGg--------CuuCCGUUGCG- -5'
22917 3' -46.3 NC_005137.2 + 117727 0.67 0.99968
Target:  5'- -cGUCAGcc-GCACC---GGCGGCGCa -3'
miRNA:   3'- caUAGUUuaaCGUGGcuuCCGUUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.