miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22924 5' -55 NC_005137.2 + 39286 0.65 0.932895
Target:  5'- uGGCGuacacguCGCGCGCAaaaaGUGCGu-CGUUu -3'
miRNA:   3'- gCUGCu------GCGUGCGUg---CACGCuuGCAA- -5'
22924 5' -55 NC_005137.2 + 62317 0.65 0.932895
Target:  5'- gGAUGucuCGCAgGCGCcUGCGAAgCGUUc -3'
miRNA:   3'- gCUGCu--GCGUgCGUGcACGCUU-GCAA- -5'
22924 5' -55 NC_005137.2 + 72287 0.65 0.932895
Target:  5'- gGACG-UGC-CGCAgCGUuagGCGAACGUa -3'
miRNA:   3'- gCUGCuGCGuGCGU-GCA---CGCUUGCAa -5'
22924 5' -55 NC_005137.2 + 99960 0.65 0.932895
Target:  5'- -uACGGCGUacACGCGCG-GCGAccuCGUg -3'
miRNA:   3'- gcUGCUGCG--UGCGUGCaCGCUu--GCAa -5'
22924 5' -55 NC_005137.2 + 90899 0.66 0.927671
Target:  5'- cCG-UGugGCGCGCaaACGUGUuAACGUg -3'
miRNA:   3'- -GCuGCugCGUGCG--UGCACGcUUGCAa -5'
22924 5' -55 NC_005137.2 + 23535 0.66 0.927671
Target:  5'- -uACGAgcCGCACGUAUGUGC-AGCGa- -3'
miRNA:   3'- gcUGCU--GCGUGCGUGCACGcUUGCaa -5'
22924 5' -55 NC_005137.2 + 48191 0.66 0.927671
Target:  5'- aCGGCGACGU--GUGCGUGUGcACGa- -3'
miRNA:   3'- -GCUGCUGCGugCGUGCACGCuUGCaa -5'
22924 5' -55 NC_005137.2 + 79738 0.66 0.922203
Target:  5'- -uGCGACGCuauCGCACG-GCGGcGCGc- -3'
miRNA:   3'- gcUGCUGCGu--GCGUGCaCGCU-UGCaa -5'
22924 5' -55 NC_005137.2 + 28409 0.66 0.91649
Target:  5'- aGACGACGCG-GUgGCGUGCGAGuauugcaauguCGUUa -3'
miRNA:   3'- gCUGCUGCGUgCG-UGCACGCUU-----------GCAA- -5'
22924 5' -55 NC_005137.2 + 31797 0.66 0.91649
Target:  5'- gCGugGuCGCguccGCGCGCGUGCacuGAcCGUUg -3'
miRNA:   3'- -GCugCuGCG----UGCGUGCACG---CUuGCAA- -5'
22924 5' -55 NC_005137.2 + 2458 0.66 0.91649
Target:  5'- cCGACGAccacucuauCGCGCGCuauuuaugcgccGCGUGCGgcAugGUg -3'
miRNA:   3'- -GCUGCU---------GCGUGCG------------UGCACGC--UugCAa -5'
22924 5' -55 NC_005137.2 + 44000 0.66 0.910534
Target:  5'- -cGCGGCGUuuCGCACGUGCaaaucGCGUUc -3'
miRNA:   3'- gcUGCUGCGu-GCGUGCACGcu---UGCAA- -5'
22924 5' -55 NC_005137.2 + 124541 0.66 0.910534
Target:  5'- -aACGACGCGCGCGCa-GCauGACGUUa -3'
miRNA:   3'- gcUGCUGCGUGCGUGcaCGc-UUGCAA- -5'
22924 5' -55 NC_005137.2 + 119575 0.66 0.910534
Target:  5'- -aGCGACGCACGCugagcACGUGCcacacuuccgGAACa-- -3'
miRNA:   3'- gcUGCUGCGUGCG-----UGCACG----------CUUGcaa -5'
22924 5' -55 NC_005137.2 + 68813 0.66 0.910534
Target:  5'- -----cCGcCACGCGCGUGCGcACGUUg -3'
miRNA:   3'- gcugcuGC-GUGCGUGCACGCuUGCAA- -5'
22924 5' -55 NC_005137.2 + 43836 0.66 0.904336
Target:  5'- cCGuCGaACGCGauuUGCACGUGCGaAACGc- -3'
miRNA:   3'- -GCuGC-UGCGU---GCGUGCACGC-UUGCaa -5'
22924 5' -55 NC_005137.2 + 108579 0.66 0.904336
Target:  5'- uCGGCGGCGCGC-C-CGUGUGcuuuuACGUg -3'
miRNA:   3'- -GCUGCUGCGUGcGuGCACGCu----UGCAa -5'
22924 5' -55 NC_005137.2 + 55568 0.66 0.904336
Target:  5'- gGGCGGCGCcguGCGCGUG-GAGCa-- -3'
miRNA:   3'- gCUGCUGCGug-CGUGCACgCUUGcaa -5'
22924 5' -55 NC_005137.2 + 100081 0.67 0.897899
Target:  5'- -cGCGGCGCGCgGCACGUGCu------ -3'
miRNA:   3'- gcUGCUGCGUG-CGUGCACGcuugcaa -5'
22924 5' -55 NC_005137.2 + 63924 0.67 0.897899
Target:  5'- gGACGGuuCGCACGCG-GUgcGCGAAUGUc -3'
miRNA:   3'- gCUGCU--GCGUGCGUgCA--CGCUUGCAa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.