Results 1 - 20 of 74 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22940 | 5' | -51.7 | NC_005137.2 | + | 51887 | 0.65 | 0.986363 |
Target: 5'- gCAGACGCccgugaucgaagGCaCGUACAuGCGCuuccgacgcgcgcaACGGUGc -3' miRNA: 3'- -GUUUGCG------------CG-GCAUGUuUGCG--------------UGCCAC- -5' |
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22940 | 5' | -51.7 | NC_005137.2 | + | 95165 | 0.65 | 0.986363 |
Target: 5'- aCGAAUGCcaccgcacauugacGCCGUGCAcuACGCACGc-- -3' miRNA: 3'- -GUUUGCG--------------CGGCAUGUu-UGCGUGCcac -5' |
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22940 | 5' | -51.7 | NC_005137.2 | + | 94616 | 0.66 | 0.98514 |
Target: 5'- aGGugGCGUUuguUGCGuaAACGCAUGGUGu -3' miRNA: 3'- gUUugCGCGGc--AUGU--UUGCGUGCCAC- -5' |
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22940 | 5' | -51.7 | NC_005137.2 | + | 63937 | 0.66 | 0.98514 |
Target: 5'- cCGGGCGCGCg--ACcuuCGCACGGUu -3' miRNA: 3'- -GUUUGCGCGgcaUGuuuGCGUGCCAc -5' |
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22940 | 5' | -51.7 | NC_005137.2 | + | 61265 | 0.66 | 0.98514 |
Target: 5'- aCGAACGCGgCGUugGuGCGCguuuuuuacGCGGc- -3' miRNA: 3'- -GUUUGCGCgGCAugUuUGCG---------UGCCac -5' |
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22940 | 5' | -51.7 | NC_005137.2 | + | 95335 | 0.66 | 0.984958 |
Target: 5'- --uGCGUGCguaGUGCAcggcgucAAUGUGCGGUGg -3' miRNA: 3'- guuUGCGCGg--CAUGU-------UUGCGUGCCAC- -5' |
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22940 | 5' | -51.7 | NC_005137.2 | + | 110638 | 0.66 | 0.98325 |
Target: 5'- aCAAACGCGCCG-AC-GGCGUuuGGc- -3' miRNA: 3'- -GUUUGCGCGGCaUGuUUGCGugCCac -5' |
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22940 | 5' | -51.7 | NC_005137.2 | + | 88503 | 0.66 | 0.98325 |
Target: 5'- gGAAUGuCGCCGcgcaGCAAGCGC-CGuGUGc -3' miRNA: 3'- gUUUGC-GCGGCa---UGUUUGCGuGC-CAC- -5' |
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22940 | 5' | -51.7 | NC_005137.2 | + | 48125 | 0.66 | 0.98325 |
Target: 5'- gUAAugGUGaCCGUAUucGugGCcGCGGUGc -3' miRNA: 3'- -GUUugCGC-GGCAUGu-UugCG-UGCCAC- -5' |
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22940 | 5' | -51.7 | NC_005137.2 | + | 41584 | 0.66 | 0.982649 |
Target: 5'- -uAACGCGCaaaguugaguuccaCGU-CGAGCGCAucuuCGGUGg -3' miRNA: 3'- guUUGCGCG--------------GCAuGUUUGCGU----GCCAC- -5' |
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22940 | 5' | -51.7 | NC_005137.2 | + | 56494 | 0.66 | 0.981183 |
Target: 5'- -cAACGCGUCGUGuCGcgUGUACGGc- -3' miRNA: 3'- guUUGCGCGGCAU-GUuuGCGUGCCac -5' |
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22940 | 5' | -51.7 | NC_005137.2 | + | 32351 | 0.66 | 0.981183 |
Target: 5'- cCAAACGcCGCCGUGCGccGAC-CGCGu-- -3' miRNA: 3'- -GUUUGC-GCGGCAUGU--UUGcGUGCcac -5' |
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22940 | 5' | -51.7 | NC_005137.2 | + | 28043 | 0.66 | 0.981183 |
Target: 5'- uCGAACGUGgCGcgACGcGCGCugGGa- -3' miRNA: 3'- -GUUUGCGCgGCa-UGUuUGCGugCCac -5' |
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22940 | 5' | -51.7 | NC_005137.2 | + | 14195 | 0.66 | 0.981183 |
Target: 5'- aCGAACaaGCC-UACAAGCGguauGCGGUGg -3' miRNA: 3'- -GUUUGcgCGGcAUGUUUGCg---UGCCAC- -5' |
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22940 | 5' | -51.7 | NC_005137.2 | + | 131025 | 0.66 | 0.978932 |
Target: 5'- ---cCGCGgCGUACAAuucAgGCGCGGg- -3' miRNA: 3'- guuuGCGCgGCAUGUU---UgCGUGCCac -5' |
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22940 | 5' | -51.7 | NC_005137.2 | + | 18469 | 0.66 | 0.978932 |
Target: 5'- ----gGCGuCCGUGCAGucgcgaugccCGCGCGGUa -3' miRNA: 3'- guuugCGC-GGCAUGUUu---------GCGUGCCAc -5' |
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22940 | 5' | -51.7 | NC_005137.2 | + | 31858 | 0.66 | 0.978932 |
Target: 5'- gCGAACGUGCacacgucgGUGCGAccgcacaaccACGCGgCGGUGu -3' miRNA: 3'- -GUUUGCGCGg-------CAUGUU----------UGCGU-GCCAC- -5' |
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22940 | 5' | -51.7 | NC_005137.2 | + | 25888 | 0.66 | 0.976487 |
Target: 5'- gCAAACGUccugGCCGUaGCAAugGUcaGCGGa- -3' miRNA: 3'- -GUUUGCG----CGGCA-UGUUugCG--UGCCac -5' |
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22940 | 5' | -51.7 | NC_005137.2 | + | 84713 | 0.66 | 0.976487 |
Target: 5'- cCGAACGCGCCG-ACGuguUGCACa--- -3' miRNA: 3'- -GUUUGCGCGGCaUGUuu-GCGUGccac -5' |
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22940 | 5' | -51.7 | NC_005137.2 | + | 98567 | 0.67 | 0.97384 |
Target: 5'- -cAACGCGCUgGUACAucACGCACuGUu -3' miRNA: 3'- guUUGCGCGG-CAUGUu-UGCGUGcCAc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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