miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22940 5' -51.7 NC_005137.2 + 51887 0.65 0.986363
Target:  5'- gCAGACGCccgugaucgaagGCaCGUACAuGCGCuuccgacgcgcgcaACGGUGc -3'
miRNA:   3'- -GUUUGCG------------CG-GCAUGUuUGCG--------------UGCCAC- -5'
22940 5' -51.7 NC_005137.2 + 95165 0.65 0.986363
Target:  5'- aCGAAUGCcaccgcacauugacGCCGUGCAcuACGCACGc-- -3'
miRNA:   3'- -GUUUGCG--------------CGGCAUGUu-UGCGUGCcac -5'
22940 5' -51.7 NC_005137.2 + 94616 0.66 0.98514
Target:  5'- aGGugGCGUUuguUGCGuaAACGCAUGGUGu -3'
miRNA:   3'- gUUugCGCGGc--AUGU--UUGCGUGCCAC- -5'
22940 5' -51.7 NC_005137.2 + 63937 0.66 0.98514
Target:  5'- cCGGGCGCGCg--ACcuuCGCACGGUu -3'
miRNA:   3'- -GUUUGCGCGgcaUGuuuGCGUGCCAc -5'
22940 5' -51.7 NC_005137.2 + 61265 0.66 0.98514
Target:  5'- aCGAACGCGgCGUugGuGCGCguuuuuuacGCGGc- -3'
miRNA:   3'- -GUUUGCGCgGCAugUuUGCG---------UGCCac -5'
22940 5' -51.7 NC_005137.2 + 95335 0.66 0.984958
Target:  5'- --uGCGUGCguaGUGCAcggcgucAAUGUGCGGUGg -3'
miRNA:   3'- guuUGCGCGg--CAUGU-------UUGCGUGCCAC- -5'
22940 5' -51.7 NC_005137.2 + 88503 0.66 0.98325
Target:  5'- gGAAUGuCGCCGcgcaGCAAGCGC-CGuGUGc -3'
miRNA:   3'- gUUUGC-GCGGCa---UGUUUGCGuGC-CAC- -5'
22940 5' -51.7 NC_005137.2 + 110638 0.66 0.98325
Target:  5'- aCAAACGCGCCG-AC-GGCGUuuGGc- -3'
miRNA:   3'- -GUUUGCGCGGCaUGuUUGCGugCCac -5'
22940 5' -51.7 NC_005137.2 + 48125 0.66 0.98325
Target:  5'- gUAAugGUGaCCGUAUucGugGCcGCGGUGc -3'
miRNA:   3'- -GUUugCGC-GGCAUGu-UugCG-UGCCAC- -5'
22940 5' -51.7 NC_005137.2 + 41584 0.66 0.982649
Target:  5'- -uAACGCGCaaaguugaguuccaCGU-CGAGCGCAucuuCGGUGg -3'
miRNA:   3'- guUUGCGCG--------------GCAuGUUUGCGU----GCCAC- -5'
22940 5' -51.7 NC_005137.2 + 56494 0.66 0.981183
Target:  5'- -cAACGCGUCGUGuCGcgUGUACGGc- -3'
miRNA:   3'- guUUGCGCGGCAU-GUuuGCGUGCCac -5'
22940 5' -51.7 NC_005137.2 + 28043 0.66 0.981183
Target:  5'- uCGAACGUGgCGcgACGcGCGCugGGa- -3'
miRNA:   3'- -GUUUGCGCgGCa-UGUuUGCGugCCac -5'
22940 5' -51.7 NC_005137.2 + 32351 0.66 0.981183
Target:  5'- cCAAACGcCGCCGUGCGccGAC-CGCGu-- -3'
miRNA:   3'- -GUUUGC-GCGGCAUGU--UUGcGUGCcac -5'
22940 5' -51.7 NC_005137.2 + 14195 0.66 0.981183
Target:  5'- aCGAACaaGCC-UACAAGCGguauGCGGUGg -3'
miRNA:   3'- -GUUUGcgCGGcAUGUUUGCg---UGCCAC- -5'
22940 5' -51.7 NC_005137.2 + 131025 0.66 0.978932
Target:  5'- ---cCGCGgCGUACAAuucAgGCGCGGg- -3'
miRNA:   3'- guuuGCGCgGCAUGUU---UgCGUGCCac -5'
22940 5' -51.7 NC_005137.2 + 18469 0.66 0.978932
Target:  5'- ----gGCGuCCGUGCAGucgcgaugccCGCGCGGUa -3'
miRNA:   3'- guuugCGC-GGCAUGUUu---------GCGUGCCAc -5'
22940 5' -51.7 NC_005137.2 + 31858 0.66 0.978932
Target:  5'- gCGAACGUGCacacgucgGUGCGAccgcacaaccACGCGgCGGUGu -3'
miRNA:   3'- -GUUUGCGCGg-------CAUGUU----------UGCGU-GCCAC- -5'
22940 5' -51.7 NC_005137.2 + 25888 0.66 0.976487
Target:  5'- gCAAACGUccugGCCGUaGCAAugGUcaGCGGa- -3'
miRNA:   3'- -GUUUGCG----CGGCA-UGUUugCG--UGCCac -5'
22940 5' -51.7 NC_005137.2 + 84713 0.66 0.976487
Target:  5'- cCGAACGCGCCG-ACGuguUGCACa--- -3'
miRNA:   3'- -GUUUGCGCGGCaUGUuu-GCGUGccac -5'
22940 5' -51.7 NC_005137.2 + 98567 0.67 0.97384
Target:  5'- -cAACGCGCUgGUACAucACGCACuGUu -3'
miRNA:   3'- guUUGCGCGG-CAUGUu-UGCGUGcCAc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.