miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22943 5' -51.2 NC_005137.2 + 129843 0.66 0.986894
Target:  5'- --cGUUUGua-GCGCCGCC-UUCACCu -3'
miRNA:   3'- aauCAGAUuugUGUGGCGGcGAGUGG- -5'
22943 5' -51.2 NC_005137.2 + 16756 0.66 0.986894
Target:  5'- aUUAGUCga-----GCCGCCGCgCAUCa -3'
miRNA:   3'- -AAUCAGauuugugUGGCGGCGaGUGG- -5'
22943 5' -51.2 NC_005137.2 + 99279 0.66 0.986894
Target:  5'- aUUGGUUcaaAAACACGCCGCCGagUUugUu -3'
miRNA:   3'- -AAUCAGa--UUUGUGUGGCGGCg-AGugG- -5'
22943 5' -51.2 NC_005137.2 + 80389 0.66 0.986894
Target:  5'- --cGUCaucAAACGCaACCgcgcaGCCGUUCACCc -3'
miRNA:   3'- aauCAGa--UUUGUG-UGG-----CGGCGAGUGG- -5'
22943 5' -51.2 NC_005137.2 + 110604 0.66 0.986894
Target:  5'- --cGUgUAcGCGCcgGCCGCggugugcaCGCUCACCg -3'
miRNA:   3'- aauCAgAUuUGUG--UGGCG--------GCGAGUGG- -5'
22943 5' -51.2 NC_005137.2 + 46651 0.66 0.984018
Target:  5'- -cGGcgCUAAGgGCAgCGCCGCUuuaaucgaaagcacgCGCCa -3'
miRNA:   3'- aaUCa-GAUUUgUGUgGCGGCGA---------------GUGG- -5'
22943 5' -51.2 NC_005137.2 + 38625 0.66 0.983229
Target:  5'- aUAGUUuacgcuuuUAAACGuCACCGCUGCccCAUCg -3'
miRNA:   3'- aAUCAG--------AUUUGU-GUGGCGGCGa-GUGG- -5'
22943 5' -51.2 NC_005137.2 + 107299 0.66 0.983229
Target:  5'- -cGGUCggcguCACccaacCCGCCGC-CGCCu -3'
miRNA:   3'- aaUCAGauuu-GUGu----GGCGGCGaGUGG- -5'
22943 5' -51.2 NC_005137.2 + 16853 0.66 0.983229
Target:  5'- --uGUUUGAugACACCGCguUGCUgCACg -3'
miRNA:   3'- aauCAGAUUugUGUGGCG--GCGA-GUGg -5'
22943 5' -51.2 NC_005137.2 + 8806 0.66 0.981129
Target:  5'- ----aCUGAaauuGCAC-CCGCgGCUCGCUa -3'
miRNA:   3'- aaucaGAUU----UGUGuGGCGgCGAGUGG- -5'
22943 5' -51.2 NC_005137.2 + 31673 0.66 0.979076
Target:  5'- aUAG-C-GGACgACACCGCCGCgugguugugcggucgCACCg -3'
miRNA:   3'- aAUCaGaUUUG-UGUGGCGGCGa--------------GUGG- -5'
22943 5' -51.2 NC_005137.2 + 104448 0.66 0.978838
Target:  5'- -cAGUC--GACACGCCGCag--CGCCa -3'
miRNA:   3'- aaUCAGauUUGUGUGGCGgcgaGUGG- -5'
22943 5' -51.2 NC_005137.2 + 27466 0.66 0.978838
Target:  5'- ----aCUGcccaaaACGCCGCCGC-CACCg -3'
miRNA:   3'- aaucaGAUuug---UGUGGCGGCGaGUGG- -5'
22943 5' -51.2 NC_005137.2 + 12441 0.66 0.976347
Target:  5'- aUGGUUUAaucAACGCGCCGUC-CUuaacCACCg -3'
miRNA:   3'- aAUCAGAU---UUGUGUGGCGGcGA----GUGG- -5'
22943 5' -51.2 NC_005137.2 + 41317 0.66 0.976347
Target:  5'- --cGcCUAc-CACACCGCCGUcugCGCCc -3'
miRNA:   3'- aauCaGAUuuGUGUGGCGGCGa--GUGG- -5'
22943 5' -51.2 NC_005137.2 + 116634 0.66 0.976347
Target:  5'- --uGUgcGAGCGCACCGCCGUggACa -3'
miRNA:   3'- aauCAgaUUUGUGUGGCGGCGagUGg -5'
22943 5' -51.2 NC_005137.2 + 130254 0.66 0.976347
Target:  5'- ------cAAACGUGCCGCCGC-CACCg -3'
miRNA:   3'- aaucagaUUUGUGUGGCGGCGaGUGG- -5'
22943 5' -51.2 NC_005137.2 + 108723 0.67 0.973648
Target:  5'- ------cGGGCGCGCCGCCGaUCACg -3'
miRNA:   3'- aaucagaUUUGUGUGGCGGCgAGUGg -5'
22943 5' -51.2 NC_005137.2 + 88463 0.67 0.970732
Target:  5'- aUAGUUgAGACugG-CGCgGUUCACCg -3'
miRNA:   3'- aAUCAGaUUUGugUgGCGgCGAGUGG- -5'
22943 5' -51.2 NC_005137.2 + 37428 0.67 0.96422
Target:  5'- --cGUUUGGAUcaGCgugauuGCCGCCGCgCACCa -3'
miRNA:   3'- aauCAGAUUUG--UG------UGGCGGCGaGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.