miRNA display CGI


Results 1 - 20 of 130 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22953 3' -54.1 NC_005137.2 + 44281 0.66 0.954478
Target:  5'- -aGAGCguuGCGCGCuuucugcauggcuaaGUcuucgUCGCCCGCGUUu -3'
miRNA:   3'- gaUUUG---UGCGCG---------------CAa----AGCGGGCGCGG- -5'
22953 3' -54.1 NC_005137.2 + 98118 0.66 0.954478
Target:  5'- -cGAACACaGUcCGUuugguaacuuguuuaUUCGgCCGCGCCu -3'
miRNA:   3'- gaUUUGUG-CGcGCA---------------AAGCgGGCGCGG- -5'
22953 3' -54.1 NC_005137.2 + 28378 0.66 0.954478
Target:  5'- gCUAAACACGUGCucaaCGCUCGUuucuugcgcauuaucGCCc -3'
miRNA:   3'- -GAUUUGUGCGCGcaaaGCGGGCG---------------CGG- -5'
22953 3' -54.1 NC_005137.2 + 48932 0.66 0.952872
Target:  5'- ---cACACGCuguGCGg--CGCCgcguccaacgauCGCGCCg -3'
miRNA:   3'- gauuUGUGCG---CGCaaaGCGG------------GCGCGG- -5'
22953 3' -54.1 NC_005137.2 + 42516 0.66 0.952872
Target:  5'- -----aGCGCGCuaaucgcUCGCCCGC-CCg -3'
miRNA:   3'- gauuugUGCGCGcaa----AGCGGGCGcGG- -5'
22953 3' -54.1 NC_005137.2 + 101863 0.66 0.952872
Target:  5'- -aAAAUACGCaGCaauuGUUUUGUCUugGCGCCg -3'
miRNA:   3'- gaUUUGUGCG-CG----CAAAGCGGG--CGCGG- -5'
22953 3' -54.1 NC_005137.2 + 89099 0.66 0.952872
Target:  5'- -gAGAUugGCGCGgg-CGaaaCGCGCg -3'
miRNA:   3'- gaUUUGugCGCGCaaaGCgg-GCGCGg -5'
22953 3' -54.1 NC_005137.2 + 88928 0.66 0.952872
Target:  5'- gUGGACAUGCGCGa---GCaCGCGUUg -3'
miRNA:   3'- gAUUUGUGCGCGCaaagCGgGCGCGG- -5'
22953 3' -54.1 NC_005137.2 + 47561 0.66 0.94869
Target:  5'- --uGGCugGCGCGUacUUGCCaGUGCa -3'
miRNA:   3'- gauUUGugCGCGCAa-AGCGGgCGCGg -5'
22953 3' -54.1 NC_005137.2 + 45836 0.66 0.94869
Target:  5'- -aGAGCAUcCGCGUUggCGCCgC-CGCCc -3'
miRNA:   3'- gaUUUGUGcGCGCAAa-GCGG-GcGCGG- -5'
22953 3' -54.1 NC_005137.2 + 110830 0.66 0.94869
Target:  5'- --cGACGCGCaaGagUCGUgCGCGCUg -3'
miRNA:   3'- gauUUGUGCGcgCaaAGCGgGCGCGG- -5'
22953 3' -54.1 NC_005137.2 + 61557 0.66 0.948259
Target:  5'- -aGAACGCG-GCGUUucuuacgUCGgCCGCcaacGCCa -3'
miRNA:   3'- gaUUUGUGCgCGCAA-------AGCgGGCG----CGG- -5'
22953 3' -54.1 NC_005137.2 + 31241 0.66 0.94427
Target:  5'- uUGAACAUGgcCGCG--UCGUgCGCGCUc -3'
miRNA:   3'- gAUUUGUGC--GCGCaaAGCGgGCGCGG- -5'
22953 3' -54.1 NC_005137.2 + 28369 0.66 0.94427
Target:  5'- -aAAACugGCGCGaggaCGaCUGCGUCg -3'
miRNA:   3'- gaUUUGugCGCGCaaa-GCgGGCGCGG- -5'
22953 3' -54.1 NC_005137.2 + 95651 0.66 0.94427
Target:  5'- ----cCACGUcaGCGaugCGCCCGUGCg -3'
miRNA:   3'- gauuuGUGCG--CGCaaaGCGGGCGCGg -5'
22953 3' -54.1 NC_005137.2 + 36195 0.66 0.94427
Target:  5'- --cAACAa-CGCuUUUaaCGCCCGCGCCc -3'
miRNA:   3'- gauUUGUgcGCGcAAA--GCGGGCGCGG- -5'
22953 3' -54.1 NC_005137.2 + 2173 0.66 0.94427
Target:  5'- -cGAGCGCGCGCuucaucaaGUUUaGUuuGCGCg -3'
miRNA:   3'- gaUUUGUGCGCG--------CAAAgCGggCGCGg -5'
22953 3' -54.1 NC_005137.2 + 57121 0.66 0.943815
Target:  5'- uUAAACGCGCGUGccauuacaaaaacUUgaUCGCCgGcCGCUu -3'
miRNA:   3'- gAUUUGUGCGCGC-------------AA--AGCGGgC-GCGG- -5'
22953 3' -54.1 NC_005137.2 + 24092 0.66 0.942434
Target:  5'- ---uGCGCuGCGCGUUUUGCaaaguggaaauaaUGCGCUg -3'
miRNA:   3'- gauuUGUG-CGCGCAAAGCGg------------GCGCGG- -5'
22953 3' -54.1 NC_005137.2 + 124395 0.66 0.939608
Target:  5'- gCUGcGCGCGCGuCGUUUCaGCgCGCaGUUg -3'
miRNA:   3'- -GAUuUGUGCGC-GCAAAG-CGgGCG-CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.