miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22955 5' -54 NC_005137.2 + 31798 0.66 0.94191
Target:  5'- aG-CGUGGUCG-CGuccGCGCGcGUGCACu -3'
miRNA:   3'- aCaGCAUCGGCuGC---CGCGUuUACGUG- -5'
22955 5' -54 NC_005137.2 + 110820 0.66 0.94191
Target:  5'- cGcCGcccGCCGAC-GCGCAAgagucGUGCGCg -3'
miRNA:   3'- aCaGCau-CGGCUGcCGCGUU-----UACGUG- -5'
22955 5' -54 NC_005137.2 + 52020 0.66 0.937045
Target:  5'- uUGUCGc-GCCG--GGCGUAAaaggcGUGCACa -3'
miRNA:   3'- -ACAGCauCGGCugCCGCGUU-----UACGUG- -5'
22955 5' -54 NC_005137.2 + 51204 0.66 0.937045
Target:  5'- gGUCGauuuggauUGGCaaaCGAUGGUGCGcAUGUACa -3'
miRNA:   3'- aCAGC--------AUCG---GCUGCCGCGUuUACGUG- -5'
22955 5' -54 NC_005137.2 + 27251 0.66 0.937045
Target:  5'- gGUCGUAGCCGuguuccuUGGCGUAcaauuccaguucAGUGUc- -3'
miRNA:   3'- aCAGCAUCGGCu------GCCGCGU------------UUACGug -5'
22955 5' -54 NC_005137.2 + 35179 0.66 0.931927
Target:  5'- gGUCGU-GCCgGGCGucaugucuCGCAAcgGCACg -3'
miRNA:   3'- aCAGCAuCGG-CUGCc-------GCGUUuaCGUG- -5'
22955 5' -54 NC_005137.2 + 56727 0.66 0.931927
Target:  5'- cGUCG-GGUCccauaACGGCGCAAAaauuggcuugguUGCGCa -3'
miRNA:   3'- aCAGCaUCGGc----UGCCGCGUUU------------ACGUG- -5'
22955 5' -54 NC_005137.2 + 49059 0.66 0.931927
Target:  5'- ---gGUAGCCGuGCGaGCGCAcugcggGCGCa -3'
miRNA:   3'- acagCAUCGGC-UGC-CGCGUuua---CGUG- -5'
22955 5' -54 NC_005137.2 + 74274 0.66 0.931401
Target:  5'- gUGcCGU-GCCGGCGcgaaagccaacacGUGCAAAUGCGu -3'
miRNA:   3'- -ACaGCAuCGGCUGC-------------CGCGUUUACGUg -5'
22955 5' -54 NC_005137.2 + 1989 0.66 0.926556
Target:  5'- gGUCGUuGCCG-CGuGCacaGCucGUGCACg -3'
miRNA:   3'- aCAGCAuCGGCuGC-CG---CGuuUACGUG- -5'
22955 5' -54 NC_005137.2 + 23522 0.66 0.926556
Target:  5'- aGUCGUAGCCcuuuACGaGCcGCAcguAUGUGCa -3'
miRNA:   3'- aCAGCAUCGGc---UGC-CG-CGUu--UACGUG- -5'
22955 5' -54 NC_005137.2 + 24250 0.66 0.926556
Target:  5'- gUGcUCGccGCaaauGACGGUGCAAAauUGCACu -3'
miRNA:   3'- -AC-AGCauCGg---CUGCCGCGUUU--ACGUG- -5'
22955 5' -54 NC_005137.2 + 4388 0.66 0.926556
Target:  5'- --aCGUGucGCCGACcGaCGCAAuUGCACg -3'
miRNA:   3'- acaGCAU--CGGCUGcC-GCGUUuACGUG- -5'
22955 5' -54 NC_005137.2 + 38641 0.66 0.926556
Target:  5'- aUGUCGUAaUCGACgcugggcaGGCGCGcguuGcgGCACa -3'
miRNA:   3'- -ACAGCAUcGGCUG--------CCGCGU----UuaCGUG- -5'
22955 5' -54 NC_005137.2 + 50065 0.66 0.923211
Target:  5'- cGUUGgugaauUGGCCauuGACGcgcgccuccacggccGCGCAAAUGCGCg -3'
miRNA:   3'- aCAGC------AUCGG---CUGC---------------CGCGUUUACGUG- -5'
22955 5' -54 NC_005137.2 + 12853 0.66 0.918609
Target:  5'- gGcCGUAGCC--CGGCGCAAucuggaucacggGCGCg -3'
miRNA:   3'- aCaGCAUCGGcuGCCGCGUUua----------CGUG- -5'
22955 5' -54 NC_005137.2 + 95217 0.67 0.917433
Target:  5'- gUGUCGUgaagggcuAGCCaauugccagcuguuuGACGaagacacgguaGUGCAGAUGCACg -3'
miRNA:   3'- -ACAGCA--------UCGG---------------CUGC-----------CGCGUUUACGUG- -5'
22955 5' -54 NC_005137.2 + 95333 0.67 0.90892
Target:  5'- cGUgCGUAGUgcACGGCGUcAAUGUGCg -3'
miRNA:   3'- aCA-GCAUCGgcUGCCGCGuUUACGUG- -5'
22955 5' -54 NC_005137.2 + 31581 0.67 0.902538
Target:  5'- --aCGUGGCCGACaucGCGaCAauGAUGCAa -3'
miRNA:   3'- acaGCAUCGGCUGc--CGC-GU--UUACGUg -5'
22955 5' -54 NC_005137.2 + 50812 0.67 0.902538
Target:  5'- cGUCG-AGCCcgguaGACGG-GUuuGUGCGCg -3'
miRNA:   3'- aCAGCaUCGG-----CUGCCgCGuuUACGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.