miRNA display CGI


Results 1 - 20 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22972 3' -57.7 NC_005137.2 + 131008 0.7 0.617378
Target:  5'- gGCGCGGGC-UGCGCGUCcaacgcguucuuaGGCAAcGUCa -3'
miRNA:   3'- -CGCGCCUGuGCGCGCGG-------------CUGUUuCGG- -5'
22972 3' -57.7 NC_005137.2 + 130854 0.66 0.811561
Target:  5'- cGCGuUGGACGCGCagcccGCGCCuGAauuguacGCCg -3'
miRNA:   3'- -CGC-GCCUGUGCG-----CGCGG-CUguuu---CGG- -5'
22972 3' -57.7 NC_005137.2 + 130616 1.14 0.000872
Target:  5'- aGCGCGGACACGCGCGCCGACAAAGCCa -3'
miRNA:   3'- -CGCGCCUGUGCGCGCGGCUGUUUCGG- -5'
22972 3' -57.7 NC_005137.2 + 125052 0.67 0.775811
Target:  5'- aGC-CGGGCgGCGCgGCGCCGgaucugaacggcGCAAAGgCa -3'
miRNA:   3'- -CGcGCCUG-UGCG-CGCGGC------------UGUUUCgG- -5'
22972 3' -57.7 NC_005137.2 + 124551 0.69 0.666852
Target:  5'- uGCGCGcugaaacGACGCGCGCGCagcauGACGuuaauaugaucaaGAGCg -3'
miRNA:   3'- -CGCGC-------CUGUGCGCGCGg----CUGU-------------UUCGg -5'
22972 3' -57.7 NC_005137.2 + 122795 0.66 0.831826
Target:  5'- aGCGCGGGCgacaucaaccgcaucACGCGCaGUaaCGAUgu-GCCa -3'
miRNA:   3'- -CGCGCCUG---------------UGCGCG-CG--GCUGuuuCGG- -5'
22972 3' -57.7 NC_005137.2 + 121946 0.66 0.820122
Target:  5'- -aGCGGugGCGguaGCGCa-ACAAGuGCCg -3'
miRNA:   3'- cgCGCCugUGCg--CGCGgcUGUUU-CGG- -5'
22972 3' -57.7 NC_005137.2 + 119862 0.67 0.782227
Target:  5'- uGCGCGGcgggaugcguacguGCuaagcuguguGCGCGCGCCGu----GCCu -3'
miRNA:   3'- -CGCGCC--------------UG----------UGCGCGCGGCuguuuCGG- -5'
22972 3' -57.7 NC_005137.2 + 119293 0.67 0.779485
Target:  5'- uGUGCGGACACauguaauaCGCGCUGcaaucauacggguccGCGuuuAGGCCa -3'
miRNA:   3'- -CGCGCCUGUGc-------GCGCGGC---------------UGU---UUCGG- -5'
22972 3' -57.7 NC_005137.2 + 118559 0.67 0.802841
Target:  5'- cCGUGGACAUGaaaGCGCCuGaucacggacugcGCAuuGCCa -3'
miRNA:   3'- cGCGCCUGUGCg--CGCGG-C------------UGUuuCGG- -5'
22972 3' -57.7 NC_005137.2 + 116869 0.68 0.738057
Target:  5'- -aGCGGugugcGCAUGUGCGCUgccccgcgacuuGACAAcGGCCg -3'
miRNA:   3'- cgCGCC-----UGUGCGCGCGG------------CUGUU-UCGG- -5'
22972 3' -57.7 NC_005137.2 + 113112 0.68 0.708766
Target:  5'- aUGUGGcaaGCGCGUGCGCCaACGuucaauaaacucAAGCCu -3'
miRNA:   3'- cGCGCC---UGUGCGCGCGGcUGU------------UUCGG- -5'
22972 3' -57.7 NC_005137.2 + 113044 0.66 0.811561
Target:  5'- aGCGuCGGGUACGCGCaGCCcGCGu-GCUa -3'
miRNA:   3'- -CGC-GCCUGUGCGCG-CGGcUGUuuCGG- -5'
22972 3' -57.7 NC_005137.2 + 112889 0.66 0.844775
Target:  5'- aCGCGGGC-UGCGCGuacCCGACGcuAGUUu -3'
miRNA:   3'- cGCGCCUGuGCGCGC---GGCUGUu-UCGG- -5'
22972 3' -57.7 NC_005137.2 + 110984 0.71 0.548323
Target:  5'- aGCGCGcacGACucuUGCGCGUCGGCGGgcGGCg -3'
miRNA:   3'- -CGCGC---CUGu--GCGCGCGGCUGUU--UCGg -5'
22972 3' -57.7 NC_005137.2 + 110620 0.7 0.598215
Target:  5'- cCGUGGugACGgccgugcacaaaCGCGCCGACGGcguuuGGCUu -3'
miRNA:   3'- cGCGCCugUGC------------GCGCGGCUGUU-----UCGG- -5'
22972 3' -57.7 NC_005137.2 + 110302 0.66 0.811561
Target:  5'- uGCaGCGGuGCACGCagcuuaCGCCGAaaaAAcAGCCa -3'
miRNA:   3'- -CG-CGCC-UGUGCGc-----GCGGCUg--UU-UCGG- -5'
22972 3' -57.7 NC_005137.2 + 108729 0.66 0.808092
Target:  5'- aGCacaCGGGCGCGC-CGCCGAUcacguacauuuGCCg -3'
miRNA:   3'- -CGc--GCCUGUGCGcGCGGCUGuuu--------CGG- -5'
22972 3' -57.7 NC_005137.2 + 108316 0.83 0.115456
Target:  5'- aGgGCGGGCGCGCGCauaCCGACGccGCCg -3'
miRNA:   3'- -CgCGCCUGUGCGCGc--GGCUGUuuCGG- -5'
22972 3' -57.7 NC_005137.2 + 108161 0.68 0.697871
Target:  5'- gGCGuCGGuAUGCGCGCGCCcgcccucgcguuuGGCAAcGCg -3'
miRNA:   3'- -CGC-GCC-UGUGCGCGCGG-------------CUGUUuCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.